PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna28597.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family B3
Protein Properties Length: 267aa    MW: 29261.3 Da    PI: 4.9299
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna28597.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B348.51.6e-1520101390
                              EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                       B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                              kv+  s+v+   +l lp+kf+ e+  + +e+++++ledesgr+++ k+    ++g+  l +GW++F  +++L +gD+vvF+++  s
  mrna28597.1-v1.0-hybrid  20 KVMCLSNVTGCFCLNLPRKFCFEYL-P-KEDTMIVLEDESGREFQTKY--LVGKGG--LNAGWRGFSISHKLLAGDVVVFHRVTPS 99 
                              6666788888899********9994.3.36779***************..666666..9**********************76656 PP

                              EE CS
                       B3  89 ef 90 
                              +f
  mrna28597.1-v1.0-hybrid 100 KF 101
                              66 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.1E-1612104IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.08E-1913104IPR015300DNA-binding pseudobarrel domain
CDDcd100171.89E-2016104No hitNo description
PROSITE profilePS5086310.53218109IPR003340B3 DNA binding domain
SMARTSM010192.8E-818107IPR003340B3 DNA binding domain
PfamPF023624.1E-1320102IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MERVKKLEAN LAPEFPRVAK VMCLSNVTGC FCLNLPRKFC FEYLPKEDTM IVLEDESGRE  60
FQTKYLVGKG GLNAGWRGFS ISHKLLAGDV VVFHRVTPSK FKVTDGSNGL DEADCDLGIR  120
EIDGANIIAS GGAKVSIPSE PIQKNTIACN TSSAPISDHS GNDGEDFGSE VMDGIRLAES  180
VIPFKEVTGM ENFDVIINGL VLNSEFSKYH LTKYYELCRS QNSYLHEHIL ECLNFKLVAG  240
IISETINISD AIRACKITTS ETDFST*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna28597.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024167395.11e-155B3 domain-containing protein Os01g0234100-like
TrEMBLA0A2P6PMB21e-153A0A2P6PMB2_ROSCH; Putative transcription factor B3-Domain family
STRINGEMJ003711e-109(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF10073398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.11e-27B3 family protein