PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | mrna28596.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 227aa MW: 25539.9 Da PI: 7.3035 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 38.5 | 2e-12 | 35 | 101 | 17 | 89 |
E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 l kkf+ eh + + +++++lede+g++++ k+ + + l++GW++F a++L egD++vF+++ s+ mrna28596.1-v1.0-hybrid 35 GLTKKFCCEHL-P-KHDTMIILEDERGEEYQTKY--LAEK--VGLSGGWRGFSIAHELVEGDVLVFHRVTPSK 101 4789***9994.3.35679***************..4444..55***********************765455 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01019 | 7.0E-10 | 21 | 105 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 1.77E-13 | 35 | 102 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 7.4E-10 | 36 | 102 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 2.8E-12 | 36 | 102 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 9.065 | 36 | 110 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.48E-16 | 38 | 103 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 227 aa Download sequence Send to blast |
MSTNESLTFQ EPSRVTTPAL IVGTLFFHGC QHENGLTKKF CCEHLPKHDT MIILEDERGE 60 EYQTKYLAEK VGLSGGWRGF SIAHELVEGD VLVFHRVTPS KFKEEYEDVQ PISVENPQKD 120 NTIAYNTIPS PMSNLSEHAK IIQRTRVRST PSISTVHFDA WINLQIGVFS RRKFAVDAEP 180 LESVTDGIVD ANQMMELGEK LKSRRKKKKK GDDGSHGTRS FGFKQA* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 203 | 209 | RRKKKKK |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | mrna28596.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_024167349.1 | 1e-47 | B3 domain-containing protein Os01g0234100-like isoform X2 | ||||
TrEMBL | A0A2P6PM87 | 3e-46 | A0A2P6PM87_ROSCH; Putative transcription factor B3-Domain family | ||||
STRING | XP_008236526.1 | 2e-35 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3336 | 31 | 68 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G19184.1 | 1e-22 | B3 family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | mrna28596.1-v1.0-hybrid |