PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna28487.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | NAC | ||||||||
Protein Properties | Length: 351aa MW: 40516.7 Da PI: 6.2512 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 89.8 | 4.7e-28 | 5 | 133 | 1 | 127 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk....leleevikevdiykvePwdLpkkvkaeek.ewyfFskrdkkyatgkrknratksg 81 +p+GfrFhP+d elv++yL kv+g++ + ++evdiy ePw++ ++++ +++ ++yfF+ ++k +++gkr r t+ g mrna28487.1-v1.0-hybrid 5 MPKGFRFHPKDYELVNYYLYGKVNGEEsvspPPY-LKLPEVDIYGEEPWEIWERFERQDEeSLYFFAIHRKLNPKGKRIDRRTNLG 89 699***********************97653333.469*************877777666266*********************** PP NAM 82 yWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyr 127 +W++ ++++v +++g+ +g+k+ + + + + + +++ W m+ey+ mrna28487.1-v1.0-hybrid 90 TWSEGERSRPVDDENGKPIGTKRKFRYES--DDSLHHAAWHMEEYS 133 **************************984..555569********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 6.54E-30 | 3 | 147 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 29.499 | 5 | 167 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.6E-16 | 6 | 133 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 351 aa Download sequence Send to blast |
MSIVMPKGFR FHPKDYELVN YYLYGKVNGE ESVSPPPYLK LPEVDIYGEE PWEIWERFER 60 QDEESLYFFA IHRKLNPKGK RIDRRTNLGT WSEGERSRPV DDENGKPIGT KRKFRYESDD 120 SLHHAAWHME EYSSNFSPHW VICHLKKNKR SSESKKTKDT LCEYDPPRLR GMKCNKRKNN 180 KDYPSTSIMP KSKRLRKVDN QVVENSSVKE KDLPQSSGGA NDQQFSMPGN NNYFENGLQQ 240 ISTTTSSTNG KDQQFCTADL GNFMPISDVN VVDSTYTPCN NNYYNYEKDF QQSSTTTCST 300 YEHINSTSNL DFVVGHDDGN VIPINDAKGD DPNSWYNLWN TLLTEDYSGC * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna28487.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004306365.1 | 0.0 | PREDICTED: NAC domain-containing protein 2-like | ||||
STRING | XP_004306365.1 | 0.0 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF33934 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G27300.1 | 1e-19 | NTM1-like 8 |
Link Out ? help Back to Top | |
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Phytozome | mrna28487.1-v1.0-hybrid |