PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna28478.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family LBD
Protein Properties Length: 239aa    MW: 25838.9 Da    PI: 7.9443
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna28478.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260140.55.4e-4415113199
                   DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86 
                              +CaaCk+lrrkC +dCv+apyfp e+p+kfanvhk+FGasnv+kll+++ +++reda++sl+yeAear++dPvyG+vg i+ lq+q
  mrna28478.1-v1.0-hybrid  15 PCAACKFLRRKCMPDCVFAPYFPPEEPHKFANVHKIFGASNVSKLLNEVLPHQREDAVNSLAYEAEARIKDPVYGCVGAISVLQRQ 100
                              7************************************************************************************* PP

                   DUF260  87 leqlkaelallke 99 
                              + +l++el+++++
  mrna28478.1-v1.0-hybrid 101 VLRLQKELDATNA 113
                              ********99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089127.69214115IPR004883Lateral organ boundaries, LOB
PfamPF031951.6E-4315112IPR004883Lateral organ boundaries, LOB
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009001anatomyfruit
PO:0007010developmental stagewhole plant fruit ripening stage
PO:0007027developmental stagewhole plant fruit formation stage 70% to final size
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MASSSSYSSS SCNSPCAACK FLRRKCMPDC VFAPYFPPEE PHKFANVHKI FGASNVSKLL  60
NEVLPHQRED AVNSLAYEAE ARIKDPVYGC VGAISVLQRQ VLRLQKELDA TNADLLRYAG  120
ASCNRGTGRG SHHVGQNPDP DPPNDSDLTD RDMWTDIRKV AALEDISGSS PSTGRCNVYD  180
NGVRRAMHNQ FGKYYVSVSV SVSVFVTVSK CRPDESGVKN ARNDGVGGNG ASATLDRF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-6481194115LOB family transfactor Ramosa2.1
5ly0_B1e-6481194115LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna28478.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004304650.15e-98PREDICTED: LOB domain-containing protein 25
TrEMBLA0A2P6S5S25e-83A0A2P6S5S2_ROSCH; Putative transcription factor AS2-LOB family
STRINGXP_004304650.12e-97(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF109134112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27650.13e-63LOB domain-containing protein 25