PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna28409.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family M-type_MADS
Protein Properties Length: 217aa    MW: 25093 Da    PI: 4.6037
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna28409.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF55.19.7e-18957149
                             S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                   SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                             k+i+nk + +vt++kRr+g++ KA EL+ +C+ae+a++ +s+ gk++ +
  mrna28409.1-v1.0-hybrid  9 KKINNKNKVKVTYTKRRQGLFRKAVELCDMCGAEIAILTISPGGKFRNF 57
                             689*******************************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006622.665161IPR002100Transcription factor, MADS-box
SMARTSM004325.2E-22160IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.16E-22286IPR002100Transcription factor, MADS-box
PRINTSPR004043.1E-14323IPR002100Transcription factor, MADS-box
PfamPF003191.1E-151057IPR002100Transcription factor, MADS-box
PRINTSPR004043.1E-142338IPR002100Transcription factor, MADS-box
PRINTSPR004043.1E-143859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MGRRKIEIKK INNKNKVKVT YTKRRQGLFR KAVELCDMCG AEIAILTISP GGKFRNFGHP  60
DVDSIIARYC GDATSVTVNE NHDCVSHEDD EEEEDDEEED LEGEQERELE VSTYKVDESI  120
DIGSIGSSHK VGEEKELINP IEEKDLISHI NKERDGRSLM KFSWDKEEPI DPKLLRMYYH  180
SLTELRNNIV WVLNDRNTRE SYAKDYINMI DISYDM*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna28409.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004306344.11e-158PREDICTED: agamous-like MADS-box protein AGL61
TrEMBLA0A2P6PAL73e-74A0A2P6PAL7_ROSCH; Putative transcription factor MADS-type1 family
TrEMBLA0A2P6Q8663e-74A0A2P6Q866_ROSCH; Putative transcription factor MADS-type1 family
STRINGXP_004306344.11e-157(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2214924
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.13e-18AGAMOUS-like 62