PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | mrna28320.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 519aa MW: 56599.1 Da PI: 6.0651 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 18.6 | 3.4e-06 | 25 | 60 | 19 | 54 |
HHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 19 afeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++Lr+l+P+ + +s K+s + +L++++ YI++L mrna28320.1-v1.0-hybrid 25 LVSKLRQLVPEiR-DRRSDKVSASKVLQETCSYIRNL 60 5689*******76.99*******************99 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 9.699 | 6 | 60 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 0.0021 | 20 | 64 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 7.5E-7 | 21 | 75 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.36E-7 | 23 | 79 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF54928 | 7.47E-11 | 242 | 339 | IPR012677 | Nucleotide-binding alpha-beta plait domain |
Gene3D | G3DSA:3.30.70.330 | 1.3E-8 | 254 | 332 | IPR012677 | Nucleotide-binding alpha-beta plait domain |
PROSITE profile | PS50102 | 8.825 | 257 | 344 | IPR000504 | RNA recognition motif domain |
CDD | cd12269 | 4.02E-29 | 259 | 340 | No hit | No description |
Pfam | PF00076 | 2.2E-4 | 261 | 325 | IPR000504 | RNA recognition motif domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0000166 | Molecular Function | nucleotide binding | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 519 aa Download sequence Send to blast |
MSSRRSSRQS SGSTPSIKDD QIIELVSKLR QLVPEIRDRR SDKVSASKVL QETCSYIRNL 60 HREVDDLSER LSQLLATIDA DSAEAAIIRS LIMQVIHIQI AMWQAEVIPN QSLMLSTTLL 120 NPLLKLIQDI KPLASNFKHI LSPTSLETNF VADRFSLGYD IATVVVWENK DPLNALKTLL 180 FDIFGTSSAD PFGTFILSQL RNQIPHQSDR TQLRQRPKTG VPCASNAIKT TLLRLLLSDP 240 HHDSIPEGLR KMYPGGYSVE VTSLSPKATE KDVYDFFSHC GAVEHVEIMS VSDWDDDFIV 300 DNRSGEYACA AYVTFRDAYA LETAVLLSGS RIVDQCVCIA RWGNYVDEID PWNGPAFNSE 360 NHSSSTAFHT SQFISSPGEA VTVAQEVVKT MVAKGYVLGQ DALIKAKALD ESYQVSATAA 420 AKVYELSDRI GLTERIHAGR EVVKSLDENF HVSEITKTAA TATGTAVVVA ATVTGRAALA 480 AGSAVVNSSY FAKGSLWVSD ILTRAGKAAA DLGSHDSK* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | mrna28320.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004296551.1 | 1e-166 | PREDICTED: protein vip1-like | ||||
TrEMBL | A0A2P6S4Q1 | 1e-151 | A0A2P6S4Q1_ROSCH; Putative nucleotide-binding alpha-beta plait domain-containing protein | ||||
STRING | XP_004296551.1 | 1e-165 | (Fragaria vesca) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G26945.1 | 2e-33 | bHLH family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | mrna28320.1-v1.0-hybrid |