PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna28320.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family bHLH
Protein Properties Length: 519aa    MW: 56599.1 Da    PI: 6.0651
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna28320.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH18.63.4e-0625601954
                             HHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                      HLH 19 afeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                               ++Lr+l+P+ +   +s K+s + +L++++ YI++L
  mrna28320.1-v1.0-hybrid 25 LVSKLRQLVPEiR-DRRSDKVSASKVLQETCSYIRNL 60
                             5689*******76.99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.699660IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000830.00212064No hitNo description
Gene3DG3DSA:4.10.280.107.5E-72175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.36E-72379IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF549287.47E-11242339IPR012677Nucleotide-binding alpha-beta plait domain
Gene3DG3DSA:3.30.70.3301.3E-8254332IPR012677Nucleotide-binding alpha-beta plait domain
PROSITE profilePS501028.825257344IPR000504RNA recognition motif domain
CDDcd122694.02E-29259340No hitNo description
PfamPF000762.2E-4261325IPR000504RNA recognition motif domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000166Molecular Functionnucleotide binding
GO:0003676Molecular Functionnucleic acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 519 aa     Download sequence    Send to blast
MSSRRSSRQS SGSTPSIKDD QIIELVSKLR QLVPEIRDRR SDKVSASKVL QETCSYIRNL  60
HREVDDLSER LSQLLATIDA DSAEAAIIRS LIMQVIHIQI AMWQAEVIPN QSLMLSTTLL  120
NPLLKLIQDI KPLASNFKHI LSPTSLETNF VADRFSLGYD IATVVVWENK DPLNALKTLL  180
FDIFGTSSAD PFGTFILSQL RNQIPHQSDR TQLRQRPKTG VPCASNAIKT TLLRLLLSDP  240
HHDSIPEGLR KMYPGGYSVE VTSLSPKATE KDVYDFFSHC GAVEHVEIMS VSDWDDDFIV  300
DNRSGEYACA AYVTFRDAYA LETAVLLSGS RIVDQCVCIA RWGNYVDEID PWNGPAFNSE  360
NHSSSTAFHT SQFISSPGEA VTVAQEVVKT MVAKGYVLGQ DALIKAKALD ESYQVSATAA  420
AKVYELSDRI GLTERIHAGR EVVKSLDENF HVSEITKTAA TATGTAVVVA ATVTGRAALA  480
AGSAVVNSSY FAKGSLWVSD ILTRAGKAAA DLGSHDSK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna28320.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004296551.11e-166PREDICTED: protein vip1-like
TrEMBLA0A2P6S4Q11e-151A0A2P6S4Q1_ROSCH; Putative nucleotide-binding alpha-beta plait domain-containing protein
STRINGXP_004296551.11e-165(Fragaria vesca)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26945.12e-33bHLH family protein