PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna28174.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family WRKY
Protein Properties Length: 621aa    MW: 67975.6 Da    PI: 7.8919
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna28174.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY106.21.7e-33269326260
                              --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                     WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                              dDg+nWrKYGqK+vkgse+prsYY+Ct+++Cp+kkkvers  d++++ei+Y+g+Hnh+k
  mrna28174.1-v1.0-hybrid 269 DDGFNWRKYGQKQVKGSENPRSYYKCTYPNCPTKKKVERSL-DGQITEIVYKGNHNHPK 326
                              8****************************************.***************85 PP
2WRKY105.43e-33443501159
                              ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                     WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                              ldDgy+WrKYGqK+vkg+++prsYY+Ct +gCpv+k+ver+++d ++v++tYeg+Hnh+
  mrna28174.1-v1.0-hybrid 443 LDDGYRWRKYGQKVVKGNPNPRSYYKCTNPGCPVRKHVERASHDLRAVITTYEGKHNHD 501
                              59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.8E-28263327IPR003657WRKY domain
SuperFamilySSF1182901.09E-24267327IPR003657WRKY domain
SMARTSM007745.2E-37268326IPR003657WRKY domain
PfamPF031061.3E-25269325IPR003657WRKY domain
PROSITE profilePS5081123.456269327IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.2E-37428503IPR003657WRKY domain
SuperFamilySSF1182903.4E-29435503IPR003657WRKY domain
PROSITE profilePS5081138.377438503IPR003657WRKY domain
SMARTSM007743.1E-39443502IPR003657WRKY domain
PfamPF031061.0E-25444501IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009753Biological Processresponse to jasmonic acid
GO:0009788Biological Processnegative regulation of abscisic acid-activated signaling pathway
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009005anatomyroot
PO:0007134developmental stagesporophyte vegetative stage
Sequence ? help Back to Top
Protein Sequence    Length: 621 aa     Download sequence    Send to blast
MASSSGSLDT SANSHPSNFT FSTHPFMNTS FSDLLSSGAE PTNPITRYSG HGLSDRIAER  60
TGSGVPKFKS LPPPQLPISP PSVSPSSYFA IPPGMSPAEL LDSPILPSPT TGSFAAQAFN  120
WRTNSGSGTN NNNNNNSQSV KKEHKNYSDF SFQTQTRPPP TSSSAIFQSS NSSIQTAQEQ  180
AWNNYLGPSK QDEFSSGKSM VKPEYGSSVQ SFSSEMATNM QGNNVQANSN GGFQSDQYSN  240
YNNTNTTGNN NNNNNTQLQS HQCLNKRSDD GFNWRKYGQK QVKGSENPRS YYKCTYPNCP  300
TKKKVERSLD GQITEIVYKG NHNHPKPQNT RRSGSSAAST HAVQVSSQTT NDIPDHSFGS  360
HGNSQMDNSI GTPENSSLSL GDDEFDQSSQ RSKSGGGDEY DEDEPNAKRW KKEGDNECIS  420
APGSRTVREP RVVVQTTSDI DILDDGYRWR KYGQKVVKGN PNPRSYYKCT NPGCPVRKHV  480
ERASHDLRAV ITTYEGKHNH DVPAARGSGS ANRPLPSNNT NNNNNMNNHH NVAPAMRPMT  540
HHSTNNAANN NPIQNLRLPT SEGQAPFTLE MLQSPGSYGF AGFENSMGSY MNQTQLNDNN  600
MFSKTKDEPR DDAFFESLLC *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A9e-38269504878Probable WRKY transcription factor 4
2lex_A9e-38269504878Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna28174.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004294758.10.0PREDICTED: probable WRKY transcription factor 25
TrEMBLA0A2P6QKI30.0A0A2P6QKI3_ROSCH; Putative transcription factor WRKY family
STRINGXP_004294758.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF107734114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38470.11e-111WRKY DNA-binding protein 33