PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna28137.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | LBD | ||||||||
Protein Properties | Length: 382aa MW: 41483.5 Da PI: 9.8494 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 132.5 | 1.7e-41 | 190 | 289 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86 +CaaCk+lrr+Ca++C+++pyf ++p+kfa vhk+FGasnv+kll ++pe++r da++slvyeA+ r+rdPvyG++gvi++lqq+ mrna28137.1-v1.0-hybrid 190 PCAACKLLRRRCAEECPFSPYFSPHEPHKFASVHKVFGASNVSKLLMEVPENQRADAANSLVYEANLRIRDPVYGCMGVISDLQQK 275 7************************************************************************************* PP DUF260 87 leqlkaelallkee 100 +++l+ael+++++e mrna28137.1-v1.0-hybrid 276 VQSLQAELHAVRTE 289 *********99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.794 | 189 | 290 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.5E-41 | 190 | 287 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 382 aa Download sequence Send to blast |
MEDYHGRASA SVSVPFNWES QPGTPKSKFH QNLTLPPLTP PPSYFYNTKS TNNRDRPKTK 60 IKNSKSLLLL NIFPKLRSRK ASTPSSPASS SSPSNSRSSS TSSASSVTYY SVPSSPVSTP 120 ARNHCARGRT LPSPRVQPEF DSGMLYPHEY GYGSRVSTTT TSADQMVMMS RQNNSFGQLP 180 GMTTLNTITP CAACKLLRRR CAEECPFSPY FSPHEPHKFA SVHKVFGASN VSKLLMEVPE 240 NQRADAANSL VYEANLRIRD PVYGCMGVIS DLQQKVQSLQ AELHAVRTEI VRYRYKELAA 300 SQILSSRDQI HPHHAAASLV SSGMVSIAAP PQPISTSLPA VPPSSVAFSS SSSTSTSSLY 360 TPSTNTTGYS SLSSENIPYF D* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-44 | 183 | 300 | 4 | 121 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-44 | 183 | 300 | 4 | 121 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna28137.1-v1.0-hybrid |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004294745.2 | 1e-160 | PREDICTED: LOB domain-containing protein 15-like | ||||
TrEMBL | A0A2P6QKN8 | 1e-106 | A0A2P6QKN8_ROSCH; Putative transcription factor AS2-LOB family | ||||
STRING | XP_004294745.1 | 1e-156 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2298 | 34 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G30340.1 | 6e-69 | LOB domain-containing protein 13 |
Link Out ? help Back to Top | |
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Phytozome | mrna28137.1-v1.0-hybrid |