PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna28137.1-v1.0-hybrid
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family LBD
Protein Properties Length: 382aa    MW: 41483.5 Da    PI: 9.8494
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna28137.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260132.51.7e-411902891100
                   DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86 
                              +CaaCk+lrr+Ca++C+++pyf  ++p+kfa vhk+FGasnv+kll ++pe++r da++slvyeA+ r+rdPvyG++gvi++lqq+
  mrna28137.1-v1.0-hybrid 190 PCAACKLLRRRCAEECPFSPYFSPHEPHKFASVHKVFGASNVSKLLMEVPENQRADAANSLVYEANLRIRDPVYGCMGVISDLQQK 275
                              7************************************************************************************* PP

                   DUF260  87 leqlkaelallkee 100
                              +++l+ael+++++e
  mrna28137.1-v1.0-hybrid 276 VQSLQAELHAVRTE 289
                              *********99987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.794189290IPR004883Lateral organ boundaries, LOB
PfamPF031951.5E-41190287IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MEDYHGRASA SVSVPFNWES QPGTPKSKFH QNLTLPPLTP PPSYFYNTKS TNNRDRPKTK  60
IKNSKSLLLL NIFPKLRSRK ASTPSSPASS SSPSNSRSSS TSSASSVTYY SVPSSPVSTP  120
ARNHCARGRT LPSPRVQPEF DSGMLYPHEY GYGSRVSTTT TSADQMVMMS RQNNSFGQLP  180
GMTTLNTITP CAACKLLRRR CAEECPFSPY FSPHEPHKFA SVHKVFGASN VSKLLMEVPE  240
NQRADAANSL VYEANLRIRD PVYGCMGVIS DLQQKVQSLQ AELHAVRTEI VRYRYKELAA  300
SQILSSRDQI HPHHAAASLV SSGMVSIAAP PQPISTSLPA VPPSSVAFSS SSSTSTSSLY  360
TPSTNTTGYS SLSSENIPYF D*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-441833004121LOB family transfactor Ramosa2.1
5ly0_B2e-441833004121LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna28137.1-v1.0-hybrid
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004294745.21e-160PREDICTED: LOB domain-containing protein 15-like
TrEMBLA0A2P6QKN81e-106A0A2P6QKN8_ROSCH; Putative transcription factor AS2-LOB family
STRINGXP_004294745.11e-156(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22983486
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30340.16e-69LOB domain-containing protein 13