PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

mrna28103.1-v1.0-hybrid

Organism

Fragaria vesca

Taxonomic ID

57918

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

bZIP

Protein Properties

Length: 427aa MW: 46283.4 Da PI: 6.8478

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
mrna28103.1-v1.0-hybrid	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	31.6	3.7e-10	226	274	5	53
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelk 53 kr++r NR +A rs +RK +i+eLe+kv++L++e ++L +l + mrna28103.1-v1.0-hybrid 226 KRAKRILANRQSAARSKERKARYIQELERKVQTLQTEATTLSAQLTLFQ 274 9****************************************99887665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	3.2E-16	222	286	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.875	224	287	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	3.8E-8	226	280	No hit	No description
SuperFamily	SSF57959	8.44E-11	226	277	No hit	No description
Pfam	PF00170	1.7E-8	226	277	IPR004827	Basic-leucine zipper domain
CDD	cd14703	3.17E-23	227	276	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 427 aa Download sequence Send to blast
MSSTTPPPPQ PEPPKPMHHH SNPNPIPIPN PNPTFLPNPK DPLFLPSPAA NVKPTVISSE 60 NRAAPFTTSA ATSSSSTSSS SSSSTSTMLG SLPNTNPFIR SSTSAHHHFP ATTHRRAHSE 120 VSFRLPEDLM DLSGPDPFTS SAAAAADDEE DLFSTYIDLD KLQAGASAAT DDDSGGGGEK 180 RAASRHRHSS SVDTSSTSTG VFGEVMEAKK AMPPDKLAEL WTLDPKRAKR ILANRQSAAR 240 SKERKARYIQ ELERKVQTLQ TEATTLSAQL TLFQRDTTGL NTENTELKLR LQAMEQQAQL 300 RDALNEALKK EVERLKFATG EMMNHSESFN LGMQQMPYNN NQSAYFPITQ QQPGPAGHQN 360 MQMPPFNHSQ SSMPSNLHQP NSHTLSDIMQ NGPVGQLQGL DISNKMPHLV KSEGPSLSAS 420 ESSTTF*

Sequence ? help Back to Top

Protein Sequence Length: 427 aa Download sequence Send to blast

MSSTTPPPPQ PEPPKPMHHH SNPNPIPIPN PNPTFLPNPK DPLFLPSPAA NVKPTVISSE  60
NRAAPFTTSA ATSSSSTSSS SSSSTSTMLG SLPNTNPFIR SSTSAHHHFP ATTHRRAHSE  120
VSFRLPEDLM DLSGPDPFTS SAAAAADDEE DLFSTYIDLD KLQAGASAAT DDDSGGGGEK  180
RAASRHRHSS SVDTSSTSTG VFGEVMEAKK AMPPDKLAEL WTLDPKRAKR ILANRQSAAR  240
SKERKARYIQ ELERKVQTLQ TEATTLSAQL TLFQRDTTGL NTENTELKLR LQAMEQQAQL  300
RDALNEALKK EVERLKFATG EMMNHSESFN LGMQQMPYNN NQSAYFPITQ QQPGPAGHQN  360
MQMPPFNHSQ SSMPSNLHQP NSHTLSDIMQ NGPVGQLQGL DISNKMPHLV KSEGPSLSAS  420
ESSTTF*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor probably involved in vascular development and shoot tissue organization. Binds to the DNA sequence 5'-CCGAGTGTGCCCCTGG-3' present in the promoter region Box II of the phloem-specific rice tungro bacilliform virus (RTBV) promoter. May regulate tissue-specific expression of the RTBV promoter and virus replication. {ECO:0000269\|PubMed:14704272}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	mrna28103.1-v1.0-hybrid

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004296017.2	0.0	PREDICTED: transcription factor RF2b-like
Swissprot	Q6S4P4	8e-99	RF2B_ORYSJ; Transcription factor RF2b
TrEMBL	A0A2P6QKV6	0.0	A0A2P6QKV6_ROSCH; Putative transcription factor bZIP family
STRING	XP_004296017.1	0.0	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1548	34	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G06850.1	9e-80	basic leucine-zipper 52

Link Out ? help Back to Top
Phytozome	mrna28103.1-v1.0-hybrid

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Dai S,Zhang Z,Bick J,Beachy RN Essential role of the Box II cis element and cognate host factors in regulating the promoter of Rice tungro bacilliform virus. J. Gen. Virol., 2006. 87(Pt 3): p. 715-22 [PMID:16476995] Liu Y,Dai S,Beachy RN Role of the C-terminal domains of rice (Oryza sativa L.) bZIP proteins RF2a and RF2b in regulating transcription. Biochem. J., 2007. 405(2): p. 243-9 [PMID:17371296] Dai S, et al. Transgenic rice plants that overexpress transcription factors RF2a and RF2b are tolerant to rice tungro virus replication and disease. Proc. Natl. Acad. Sci. U.S.A., 2008. 105(52): p. 21012-6 [PMID:19104064]