PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

mrna28054.1-v1.0-hybrid

Organism

Fragaria vesca

Taxonomic ID

57918

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

Protein Properties

Length: 295aa MW: 33544.2 Da PI: 10.0139

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
mrna28054.1-v1.0-hybrid	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	59.1	7.7e-19	133	221	1	96
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 f+k +++s+v + +l lp kf+e+h ++k ++ +++lede+g++ + k+ k+ + l++GW++F+ +++L++gD +vF+l++ mrna28054.1-v1.0-hybrid 133 FVKSMVRSHVYSCFWLGLPSKFCEDH-LPKSSDSDMVLEDEDGNECDAKY--LSKR--TGLSGGWRGFALEHKLDDGDALVFELVE 213 89*******************999.45567779***********..4444..44*********************998 PP SSEE..EEEE CS B3 87 rsefelvvkv 96 ++f ++ + mrna28054.1-v1.0-hybrid 214 PTRF--KIYI 221 6777..4444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	4.1E-21	125	223	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	2.35E-22	126	223	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	3.43E-28	131	223	No hit	No description
PROSITE profile	PS50863	12.012	133	225	IPR003340	B3 DNA binding domain
SMART	SM01019	4.2E-24	133	225	IPR003340	B3 DNA binding domain
Pfam	PF02362	2.0E-17	133	220	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 295 aa Download sequence Send to blast
MVAPYEEARN KRLEENRKKF QDLGITQISK TLSDLTAPEK KPQRVWKPKA KNTVFEVEPR 60 RSTRQRNPIQ SYVDDVDIGL PTRKRLRSSS SSFGSYLARP LEECRMASYE ERSAAFKAAE 120 RLQESLQSGN PSFVKSMVRS HVYSCFWLGL PSKFCEDHLP KSSDSDMVLE DEDGNECDAK 180 YLSKRTGLSG GWRGFALEHK LDDGDALVFE LVEPTRFKIY IVKVTTQEHC KKDKVKSAGK 240 PSKAAKKPDR DSSQKQRSKR ATTPEIIDMK TPPELLPESP KSEAVLPYRL RKRA*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	mrna28054.1-v1.0-hybrid

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004296006.1	0.0	PREDICTED: putative B3 domain-containing protein At5g58280
Refseq	XP_011461381.1	0.0	PREDICTED: putative B3 domain-containing protein At5g58280
Swissprot	Q9FHB2	3e-69	Y5828_ARATH; Putative B3 domain-containing protein At5g58280
TrEMBL	A0A2P6QL01	0.0	A0A2P6QL01_ROSCH; Putative transcription factor B3-Domain family
STRING	XP_004296006.1	0.0	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF12433	23	28

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58280.1	1e-69	B3 family protein

Link Out ? help Back to Top
Phytozome	mrna28054.1-v1.0-hybrid

Publications ? help Back to Top
Mantegazza O, et al. Analysis of the arabidopsis REM gene family predicts functions during flower development. Ann. Bot., 2014. 114(7): p. 1507-15 [PMID:25002525]