PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna28021.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family MYB
Protein Properties Length: 282aa    MW: 32009.8 Da    PI: 4.6503
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna28021.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.94.6e-131461148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                             rg+WT eEd +l + +   G ++W+ +++  g+ R++k+c++rw +yl
  mrna28021.1-v1.0-hybrid 14 RGPWTIEEDHKLMNFILNNGIHCWRMVPKLAGLLRCGKSCRLRWINYL 61
                             89******************************99************97 PP
2Myb_DNA-binding52.31.3e-1667110146
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                              rg++T+ E+ ++++++  lG++ W++Ia++++ gRt++++k++w++
  mrna28021.1-v1.0-hybrid  67 RGAFTEAEENQIIQLHSCLGNR-WSKIASHFP-GRTDNEIKNHWNT 110
                              89********************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.6E-21564IPR009057Homeodomain-like
PROSITE profilePS5129413.517961IPR017930Myb domain
SuperFamilySSF466891.95E-2811108IPR009057Homeodomain-like
SMARTSM007176.3E-61363IPR001005SANT/Myb domain
PfamPF002496.4E-111461IPR001005SANT/Myb domain
CDDcd001671.61E-41661No hitNo description
PROSITE profilePS5129426.35762116IPR017930Myb domain
Gene3DG3DSA:1.10.10.608.9E-2665116IPR009057Homeodomain-like
SMARTSM007172.5E-1566114IPR001005SANT/Myb domain
PfamPF002493.1E-1567110IPR001005SANT/Myb domain
CDDcd001671.79E-1069110No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MGRQPCCDKV GLKRGPWTIE EDHKLMNFIL NNGIHCWRMV PKLAGLLRCG KSCRLRWINY  60
LRPDLKRGAF TEAEENQIIQ LHSCLGNRWS KIASHFPGRT DNEIKNHWNT RIKKRLKLLG  120
VDSVNNKAIE PKESMEENKE IVTDISTELG QDNGSEPKLL QDEDNGNKGF EELPNEVDLS  180
AFDETTDVLK NYDMFCGSLD LEEFMLNQGV SNSSTTSSNN TSAATTTTNS SFSVEESNYN  240
PSIIGDQLLL QQNCLQQWVE SVDSMLSWDG FNNLEQDLFY F*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-28121165108B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00510DAPTransfer from AT5G14340Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna28021.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011468715.10.0PREDICTED: myb-related protein 315
TrEMBLA0A2P6S6221e-176A0A2P6S622_ROSCH; Putative transcription factor MYB-HB-like family
STRINGXP_004306403.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF66253150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14340.12e-80myb domain protein 40