PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna27940.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | NAC | ||||||||
Protein Properties | Length: 963aa MW: 107576 Da PI: 6.6645 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 94.5 | 1.7e-29 | 501 | 641 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkk....leleevikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra.. 77 p G++F+P+d+el+ ++L++kv + + ++e+i+++d i++++P++Lp +k++ ++ +fF+k+ ++y+tg+rk+r+ mrna27940.1-v1.0-hybrid 501 PTGVKFDPSDSELI-DHLAAKVGVGNskphMFIDEFIPTIDwdvgICYTHPEKLP-GAKKDGSSFHFFHKTLNAYSTGQRKRRKid 584 89************.899999877665665333445665544455**********.556778899******************878 PP NAM 78 ......tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 +++ +W++tgk+k+++ g + g kk++v+y +++ +k+ k+dWvmh+y+l mrna27940.1-v1.0-hybrid 585 keqgldAQAVRWHKTGKTKAIKG--GVHPGWKKIMVLYksSNKGSKADKADWVMHQYHL 641 88888877999**********87..999**********4435777888*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.200.20 | 3.1E-21 | 11 | 85 | No hit | No description |
SuperFamily | SSF56112 | 1.01E-73 | 12 | 306 | IPR011009 | Protein kinase-like domain |
PROSITE profile | PS50011 | 42.577 | 20 | 284 | IPR000719 | Protein kinase domain |
SMART | SM00220 | 1.7E-62 | 20 | 284 | IPR000719 | Protein kinase domain |
Pfam | PF07714 | 8.9E-56 | 24 | 280 | IPR001245 | Serine-threonine/tyrosine-protein kinase catalytic domain |
CDD | cd13999 | 1.29E-100 | 26 | 280 | No hit | No description |
PROSITE pattern | PS00107 | 0 | 26 | 47 | IPR017441 | Protein kinase, ATP binding site |
Gene3D | G3DSA:1.10.510.10 | 3.2E-51 | 86 | 280 | No hit | No description |
PROSITE pattern | PS00108 | 0 | 140 | 152 | IPR008271 | Serine/threonine-protein kinase, active site |
SuperFamily | SSF101941 | 1.12E-32 | 485 | 660 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 30.237 | 500 | 660 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.3E-12 | 501 | 641 | IPR003441 | NAC domain |
Pfam | PF07189 | 3.0E-36 | 880 | 957 | IPR009846 | Splicing factor 3B subunit 5/RDS3 complex subunit 10 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0006468 | Biological Process | protein phosphorylation | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0004672 | Molecular Function | protein kinase activity | ||||
GO:0005524 | Molecular Function | ATP binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009001 | anatomy | fruit | ||||
PO:0007010 | developmental stage | whole plant fruit ripening stage | ||||
PO:0007027 | developmental stage | whole plant fruit formation stage 70% to final size |
Sequence ? help Back to Top |
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Protein Sequence Length: 963 aa Download sequence Send to blast |
MGAAGGLDLD AKWLIDPKHL FVGPRIGEGA HAKVYEGKYK NQNVAVKIVN RGETPEEIAK 60 REARFAREVA MLSRVQHKNL VKFIGACKEP VMVIVTELLL GGTLRKYLFS MRPRCLDMPV 120 AVGFALDIAR AMECLHSHGI IHRDLKPENL ILTADHKTVK LADFGLAREE SLTEMMTAET 180 GTYRWMAPEL YSTVTLRHGE KKHYNHKVDA YSFAIVLWEL IHNKLPFEGM SNLQAAYAAA 240 FKNVRPSAED LPEDLALIVT SCWKEDPNDR PNFSQIIQML LHYLSTITPS KPAIPQRIFR 300 SDNAVLPPES PGTSSLMATH DESGETPKAD MQEKPKENPS YVWLGEQVAY DTSQLEFYQN 360 DTDTDADFKA PQASASFPRT KGPVSRTPST VGLILVSHQL GEQVALVNPG PTKGSCYWPS 420 SVKDSNPNLK ASLRGDKFFY TSEKWRVDNS CRAWLFNSRG FASKVKNCSS QVQDCGANRE 480 CPRCHYLISN SDVSTKWPGF PTGVKFDPSD SELIDHLAAK VGVGNSKPHM FIDEFIPTID 540 WDVGICYTHP EKLPGAKKDG SSFHFFHKTL NAYSTGQRKR RKIDKEQGLD AQAVRWHKTG 600 KTKAIKGGVH PGWKKIMVLY KSSNKGSKAD KADWVMHQYH LGSTEDEKEG EYVVSKIFYQ 660 QPKQTDKNED NLVKGEPESS ILQISPITPI TCPPTTPAPQ ESAWRDDDPD EYIHKSPAKV 720 TEYVPEVSQY AVLRKFEGSM SHVPQLDSQF EDNIGQPTWL AGESQADEYY GLNCVDDTLL 780 CKETFNSSTS LNGPVLNPIS ITDYANNTNG VTGNGSTSFG VPDLENLEFD SPPDFQLHGR 840 TCNPCLRGAF VLVNDLGYLV ILGKGFQIVV GDRGNMQASD RFNINSQLEH LQAKYVGTGH 900 ADLHRYEWAV NIQRDSYASY VGHHPILSYF ALAENESIGR ERYNFMQRMI KPCGPPPERE 960 DD* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ppz_A | 6e-38 | 2 | 289 | 25 | 302 | Serine/threonine-protein kinase CTR1 |
3ppz_B | 6e-38 | 2 | 289 | 25 | 302 | Serine/threonine-protein kinase CTR1 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna27940.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G01600.1 | 3e-80 | NAC domain containing protein 44 |
Link Out ? help Back to Top | |
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Phytozome | mrna27940.1-v1.0-hybrid |