PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna27940.1-v1.0-hybrid
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family NAC
Protein Properties Length: 963aa    MW: 107576 Da    PI: 6.6645
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna27940.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM94.51.7e-295016412128
                      NAM   2 ppGfrFhPtdeelvveyLkkkvegkk....leleevikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra.. 77 
                              p G++F+P+d+el+ ++L++kv   +    + ++e+i+++d    i++++P++Lp  +k++ ++ +fF+k+ ++y+tg+rk+r+  
  mrna27940.1-v1.0-hybrid 501 PTGVKFDPSDSELI-DHLAAKVGVGNskphMFIDEFIPTIDwdvgICYTHPEKLP-GAKKDGSSFHFFHKTLNAYSTGQRKRRKid 584
                              89************.899999877665665333445665544455**********.556778899******************878 PP

                      NAM  78 ......tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                                    +++ +W++tgk+k+++   g + g kk++v+y  +++ +k+ k+dWvmh+y+l
  mrna27940.1-v1.0-hybrid 585 keqgldAQAVRWHKTGKTKAIKG--GVHPGWKKIMVLYksSNKGSKADKADWVMHQYHL 641
                              88888877999**********87..999**********4435777888*********98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.200.203.1E-211185No hitNo description
SuperFamilySSF561121.01E-7312306IPR011009Protein kinase-like domain
PROSITE profilePS5001142.57720284IPR000719Protein kinase domain
SMARTSM002201.7E-6220284IPR000719Protein kinase domain
PfamPF077148.9E-5624280IPR001245Serine-threonine/tyrosine-protein kinase catalytic domain
CDDcd139991.29E-10026280No hitNo description
PROSITE patternPS0010702647IPR017441Protein kinase, ATP binding site
Gene3DG3DSA:1.10.510.103.2E-5186280No hitNo description
PROSITE patternPS001080140152IPR008271Serine/threonine-protein kinase, active site
SuperFamilySSF1019411.12E-32485660IPR003441NAC domain
PROSITE profilePS5100530.237500660IPR003441NAC domain
PfamPF023651.3E-12501641IPR003441NAC domain
PfamPF071893.0E-36880957IPR009846Splicing factor 3B subunit 5/RDS3 complex subunit 10
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006468Biological Processprotein phosphorylation
GO:0003677Molecular FunctionDNA binding
GO:0004672Molecular Functionprotein kinase activity
GO:0005524Molecular FunctionATP binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009001anatomyfruit
PO:0007010developmental stagewhole plant fruit ripening stage
PO:0007027developmental stagewhole plant fruit formation stage 70% to final size
Sequence ? help Back to Top
Protein Sequence    Length: 963 aa     Download sequence    Send to blast
MGAAGGLDLD AKWLIDPKHL FVGPRIGEGA HAKVYEGKYK NQNVAVKIVN RGETPEEIAK  60
REARFAREVA MLSRVQHKNL VKFIGACKEP VMVIVTELLL GGTLRKYLFS MRPRCLDMPV  120
AVGFALDIAR AMECLHSHGI IHRDLKPENL ILTADHKTVK LADFGLAREE SLTEMMTAET  180
GTYRWMAPEL YSTVTLRHGE KKHYNHKVDA YSFAIVLWEL IHNKLPFEGM SNLQAAYAAA  240
FKNVRPSAED LPEDLALIVT SCWKEDPNDR PNFSQIIQML LHYLSTITPS KPAIPQRIFR  300
SDNAVLPPES PGTSSLMATH DESGETPKAD MQEKPKENPS YVWLGEQVAY DTSQLEFYQN  360
DTDTDADFKA PQASASFPRT KGPVSRTPST VGLILVSHQL GEQVALVNPG PTKGSCYWPS  420
SVKDSNPNLK ASLRGDKFFY TSEKWRVDNS CRAWLFNSRG FASKVKNCSS QVQDCGANRE  480
CPRCHYLISN SDVSTKWPGF PTGVKFDPSD SELIDHLAAK VGVGNSKPHM FIDEFIPTID  540
WDVGICYTHP EKLPGAKKDG SSFHFFHKTL NAYSTGQRKR RKIDKEQGLD AQAVRWHKTG  600
KTKAIKGGVH PGWKKIMVLY KSSNKGSKAD KADWVMHQYH LGSTEDEKEG EYVVSKIFYQ  660
QPKQTDKNED NLVKGEPESS ILQISPITPI TCPPTTPAPQ ESAWRDDDPD EYIHKSPAKV  720
TEYVPEVSQY AVLRKFEGSM SHVPQLDSQF EDNIGQPTWL AGESQADEYY GLNCVDDTLL  780
CKETFNSSTS LNGPVLNPIS ITDYANNTNG VTGNGSTSFG VPDLENLEFD SPPDFQLHGR  840
TCNPCLRGAF VLVNDLGYLV ILGKGFQIVV GDRGNMQASD RFNINSQLEH LQAKYVGTGH  900
ADLHRYEWAV NIQRDSYASY VGHHPILSYF ALAENESIGR ERYNFMQRMI KPCGPPPERE  960
DD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ppz_A6e-38228925302Serine/threonine-protein kinase CTR1
3ppz_B6e-38228925302Serine/threonine-protein kinase CTR1
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna27940.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01600.13e-80NAC domain containing protein 44