PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

mrna27918.1-v1.0-hybrid

Organism

Fragaria vesca

Taxonomic ID

57918

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

G2-like

Protein Properties

Length: 313aa MW: 34033.1 Da PI: 7.6894

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
mrna27918.1-v1.0-hybrid	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	38	3.6e-12	49	74	1	26
G2-like 1 kprlrWtpeLHerFveaveqLGGsek 26 k+rlrWt++LH+rFv+a++qLGG++ mrna27918.1-v1.0-hybrid 49 KQRLRWTSDLHDRFVDAITQLGGPDS 74 79*********************985 PP
2	G2-like	50.1	5.9e-16	92	122	25	55
G2-like 25 ekAtPktilelmkvkgLtlehvkSHLQkYRl 55 + AtPk +l++m+v+gLt++hvkSHLQkYRl mrna27918.1-v1.0-hybrid 92 QGATPKGVLRVMGVPGLTIYHVKSHLQKYRL 122 569***************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.8E-29	48	123	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.94E-13	49	122	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.4E-8	49	74	IPR006447	Myb domain, plants
Pfam	PF00249	1.1E-5	51	121	IPR001005	SANT/Myb domain
TIGRFAMs	TIGR01557	6.7E-11	93	123	IPR006447	Myb domain, plants
Pfam	PF14379	1.2E-24	154	200	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 313 aa Download sequence Send to blast
MYHAKKFSTA SLVPHKPQSS EQLVASDSSV KNPTPSASNS ASASAGNGKQ RLRWTSDLHD 60 RFVDAITQLG GPDSGFETIM QDIRGSLPAA AQGATPKGVL RVMGVPGLTI YHVKSHLQKY 120 RLAKYLPESP ADGSKDEKKG SGDSLSCSDS SPGVQINEAL RMQMEVQKRL HEQLEVQRQL 180 QMRIEAQGKY LQKIIEEQQK LGGVLKGSDA LPSAEDKQKS SQLETHGDAS TKLPSPRKKH 240 RMDDGLLSDC TTSHLPPNTD QKDEFTGQWD QDVYPSVGGF GFNLRTELKE AEGGVAKQKG 300 PLELRPLCDS EQ*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	5e-18	48	125	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	5e-18	48	125	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	5e-18	48	125	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	5e-18	48	125	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	5e-18	48	125	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	5e-18	48	125	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	5e-18	48	125	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	5e-18	48	125	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	mrna27918.1-v1.0-hybrid

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FR828552	0.0	FR828552.1 Rosa hybrid cultivar mRNA for putative MYB transcription factor (myb1 gene), cultivar Yellow Island.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011461370.1	0.0	PREDICTED: protein PHR1-LIKE 1-like
Swissprot	Q9SJW0	3e-69	PHL7_ARATH; Myb family transcription factor PHL7
TrEMBL	A0A2P6RH48	0.0	A0A2P6RH48_ROSCH; Putative transcription factor MYB-HB-like family
STRING	XP_004294699.1	0.0	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF13013	23	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01060.1	7e-65	G2-like family protein

Link Out ? help Back to Top
Phytozome	mrna27918.1-v1.0-hybrid