PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna27840.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family bHLH
Protein Properties Length: 263aa    MW: 29097 Da    PI: 5.1634
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna27840.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH14.37.5e-05145185954
                              HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                      HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                              +r RR ri +++ eL +llP+++ ++        +L  ++++Ik L
  mrna27840.1-v1.0-hybrid 145 DRARRIRIAERLTELEKLLPHSVEGG-----QEFVLDDVIDHIKFL 185
                              799******************84221.....223555555555555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.508136185IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.93E-7142195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.9E-6143195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009001anatomyfruit
PO:0007010developmental stagewhole plant fruit ripening stage
PO:0007027developmental stagewhole plant fruit formation stage 70% to final size
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MGTGSSENQN DPFAVPWMVQ SSMPAQNCVN FLAESSAYLP KSPYEDMLER ISLSVNGIHA  60
ADGGVSEFQR DLLYGSSLGK ASGSKSIDFS MDMDPWKHHT SWTDTITGAS FDDVSQVDQK  120
LTLAAPGFPS RPRQSAKGQK TLVTDRARRI RIAERLTELE KLLPHSVEGG QEFVLDDVID  180
HIKFLQLQIK DLSRSRLGGE AVAEPMIFRE GYGHYFLHQQ MLSEPLEEMI GKLLETNPVA  240
ADQLLRDKGL SLVPLGWTTK LF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna27840.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004290671.10.0PREDICTED: transcription factor bHLH69
TrEMBLA0A2P6PW641e-150A0A2P6PW64_ROSCH; Putative transcription factor bHLH family
STRINGXP_004290671.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF121642426
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30980.14e-21LJRHL1-like 2