PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna27834.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family M-type_MADS
Protein Properties Length: 970aa    MW: 111738 Da    PI: 5.7939
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna27834.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF26.48.6e-096376741350
                              HHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
                   SRF-TF  13 fskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 
                              f kR+ ++ K A+EL +LC a+v+ ++  +tg +  ++
  mrna27834.1-v1.0-hybrid 637 FKKRKSTLKKSASELEILCRAQVCCVMEEPTGDVVVWP 674
                              89******************************999887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.90.190.106.1E-1576180IPR029021Protein-tyrosine phosphatase-like
SuperFamilySSF527996.36E-2179224IPR029021Protein-tyrosine phosphatase-like
CDDcd078959.88E-85252480No hitNo description
SuperFamilySSF560911.5E-41261480No hitNo description
Gene3DG3DSA:3.30.470.302.7E-32270411No hitNo description
PfamPF013314.6E-70281479IPR001339mRNA capping enzyme, catalytic domain
Gene3DG3DSA:2.40.50.1401.1E-22479563IPR012340Nucleic acid-binding, OB-fold
SuperFamilySSF502491.63E-22482586IPR012340Nucleic acid-binding, OB-fold
PfamPF039199.0E-17499568IPR013846mRNA capping enzyme, C-terminal
PROSITE profilePS500669.11625670IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.14E-11635705IPR002100Transcription factor, MADS-box
PfamPF003191.1E-9637673IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006370Biological Process7-methylguanosine mRNA capping
GO:0003677Molecular FunctionDNA binding
GO:0004484Molecular FunctionmRNA guanylyltransferase activity
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009001anatomyfruit
PO:0007010developmental stagewhole plant fruit ripening stage
PO:0007027developmental stagewhole plant fruit formation stage 70% to final size
Sequence ? help Back to Top
Protein Sequence    Length: 970 aa     Download sequence    Send to blast
MSLLSFFTVG FKDLNGVKQQ DLPKAKMDEQ ELSLWVWTEQ GTVKKDREER RMGYKRKFQY  60
EDPGIHNSRN QQSYDRYALP EGWVGCPAFG DEISGIIPSK VPLGESFSDH IHGETYTPKQ  120
VIQQQRHLGR ELGLVIDLTN TTRYYPLSDW GREGIRHVKI KCQGRDSVPD SDSVNKFIDE  180
AISEFARVRH PGIYKQDYID ALYMAYHERK PESIVCPQTP EWKRSSDQDN ENHVKNGAMT  240
IDDVLGDTIP FDQQKMLQEA CYHALDLVIT GRGKLPFPGS HPVSLNRENQ QLLRQRYYYA  300
TWKADGTRYM MLITWDACYL IDRRFHFRRV QMRFPCRFSN KVIPEKTHDF TLLDGEMIID  360
TDPNTQKQER RYLIYDVMAI NQASVVKLPF HERFKMLEKE VIEPRNMERD TLSRSAEPYY  420
RYDLEPFSVR RKGFWILSTV TKLLRKFIPG LSHASDGLIF QGWDDPYVPR THEGLLKWKF  480
PEMNSVDFLF ELAVDGRPLL FLNERGKKKL MSGFRVVFKG KIIECSWDAE GHMWVCMRIR  540
LDKSTPNEFM TYTKVMKSIK DNITEEVVLR EIDEIVRLPM YADRIKTDIK AHEQTSSARR  600
SVDEKLHALT MGKKSQNTES GGKGKELKTL KSLEKPFKKR KSTLKKSASE LEILCRAQVC  660
CVMEEPTGDV VVWPENYADA VSIITKYKQS KKKAKLNRST TNLEQLEEEN KGLAMGDEAI  720
DQSLNALENL EGFDIDQFLN NTMLFEDENK GFDNIDQFLM SNIVENVVPN EDTGGTFEIA  780
EPLNYEEHKD FDPKGFRFGD EGLDSLSGES WKHIADFSGS NIDTVDQGIT SSVEGDDHDQ  840
QNFEYHVLNN RSNSLEIEDN NVLSDHDIDQ VLNGFLGTVG FPECSRSNAH ISTAPDFEHH  900
QIDNVRGMWL SDTLRPSPQY SGLEGAFYLP NHSTKFENYN SNISPFLSSL DEQPKLMGSN  960
KSIGDIGRN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3rtx_A2e-4327757344339mRNA-capping enzyme
3rtx_B2e-4327757344339mRNA-capping enzyme
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna27834.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004290667.10.0PREDICTED: mRNA-capping enzyme-like
TrEMBLA0A2P6PW310.0A0A2P6PW31_ROSCH; Putative mRNA (Guanine-N(7)-)-methyltransferase
STRINGXP_004290667.10.0(Fragaria vesca)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11250.14e-06AGAMOUS-like 52