PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna27827.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | bHLH | ||||||||
Protein Properties | Length: 724aa MW: 80086.8 Da PI: 6.0816 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 43.9 | 4.4e-14 | 478 | 524 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h +ErrRR+++N++f Lr+l+P +K++Ka+iL ++eY+k+L+ mrna27827.1-v1.0-hybrid 478 NHVLAERRRREKLNERFIILRSLVPFV-----TKMDKASILGDTIEYVKQLR 524 7999**********************8.....8*****************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 2.9E-56 | 11 | 193 | IPR025610 | Transcription factor MYC/MYB N-terminal |
PROSITE profile | PS50888 | 17.625 | 474 | 523 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.96E-18 | 476 | 540 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.2E-11 | 478 | 523 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.6E-19 | 478 | 543 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 5.57E-15 | 478 | 528 | No hit | No description |
SMART | SM00353 | 1.4E-17 | 480 | 529 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010026 | Biological Process | trichome differentiation | ||||
GO:0010214 | Biological Process | seed coat development | ||||
GO:2000029 | Biological Process | regulation of proanthocyanidin biosynthetic process | ||||
GO:0000976 | Molecular Function | transcription regulatory region sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 724 aa Download sequence Send to blast |
MATPPPSSSR LRGMLQSAVQ SVQWTYSLFW QICPQQGMLI WADGYYNGAI KTRKTVQPME 60 VSSEEASLQR SQQLRELYDT LSAGETNQPA RRPCAALSPE DLTESEWFYL MCVSFSFPPG 120 VGLPGKAYSR RQHVWLTGAN EVDSKTFSRA ILAKSARVQT VVCIPLLDGV VELGTTDRVP 180 EDLAFVQHVK TFFVDHHHLP PPKPALSEHS TSNPATSSDH HPRFHSPHLT AIRNNAAANN 240 PPPLHAAAQE DDEDEDEEED DEGESDSEAE TGRNGNGRPL PPAGTNVPAA EPSELMQLEM 300 SEDIRLGSPD DASNNLDSDF HMLAVSQSAN AADQQRQADS YRAESARRWP PVQPPMSAVQ 360 PPPSGPLALE ELNHDDTHYS ETVSTILQTQ ATRWTDSSSN DYVTYSSQSA FAKWTSRADH 420 HLLLPVEGAS QWLLKYILFS VPFLHTKYRD ENSPKSSHDG EGSTRLRKGT SQDELSANHV 480 LAERRRREKL NERFIILRSL VPFVTKMDKA SILGDTIEYV KQLRKKIQDL EARNVHLEDD 540 QQRTRSLGEI QRSSSMKELR SGLTVTERSR VGPPGSDKRK LRIVEGSGGV AVAKPKAVEE 600 PTPPPPPPAP ELTPPTPMLT GTSLEVSIIE SDGLLELQCP YREGLLLDVM QTLRDLRIET 660 TVVQSSLNSG NFVAELRAKV GKKTTITQVK RAVNQVIPHI CKGGLLDALR LSPREASPIR 720 LRL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4rqw_A | 2e-21 | 10 | 193 | 12 | 192 | Transcription factor MYC3 |
4rqw_B | 2e-21 | 10 | 193 | 12 | 192 | Transcription factor MYC3 |
4rs9_A | 2e-21 | 10 | 193 | 12 | 192 | Transcription factor MYC3 |
4yz6_A | 2e-21 | 10 | 193 | 12 | 192 | Transcription factor MYC3 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 482 | 487 | ERRRRE |
2 | 483 | 488 | RRRREK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator involved in the control of flavonoid pigmentation. {ECO:0000269|PubMed:20949001}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna27827.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JQ989284 | 0.0 | JQ989284.1 Fragaria x ananassa transcription factor bHLH3 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004290663.1 | 0.0 | PREDICTED: basic helix-loop-helix protein A isoform X1 | ||||
Swissprot | E3SXU4 | 0.0 | BHLHW_PEA; Basic helix-loop-helix protein A | ||||
TrEMBL | A0A2H4QH11 | 0.0 | A0A2H4QH11_ROSCH; Transcription factor bHLH | ||||
STRING | XP_004290663.1 | 0.0 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3637 | 32 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G09820.1 | 1e-104 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | mrna27827.1-v1.0-hybrid |
Publications ? help Back to Top | |||
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