PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna27793.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | NAC | ||||||||
Protein Properties | Length: 201aa MW: 23359.6 Da PI: 10.7561 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 50.9 | 5.3e-16 | 153 | 196 | 2 | 46 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwd 46 + GfrFhPtdeelv +yLk+kv +k++++ ++i++vdiyk+ePwd mrna27793.1-v1.0-hybrid 153 ALGFRFHPTDEELVIYYLKRKVCRKPFKF-NAISDVDIYKSEPWD 196 67**************************9.89************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.03E-15 | 150 | 196 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 18.444 | 152 | 200 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.3E-7 | 155 | 188 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 201 aa Download sequence Send to blast |
MGRRGPSGAT RKEKERERKR RVVRGGRDIV VGCVVRSSRA RTGAWWRCLL TFGDDNPDAL 60 LLPALFVLWR SRPLVWIWGP RGWRWSCGVG DHTESLTEWQ FCNFRSSQLS SDFTNRHRHR 120 HHCRRFNFTD GSRASPVDYH TPAPKTPAPT ALALGFRFHP TDEELVIYYL KRKVCRKPFK 180 FNAISDVDIY KSEPWDRACE * |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 11 | 20 | KEKERERKRR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna27793.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G04410.1 | 9e-20 | NAC domain containing protein 2 |
Link Out ? help Back to Top | |
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Phytozome | mrna27793.1-v1.0-hybrid |