PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna27792.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family ARF
Protein Properties Length: 675aa    MW: 75334.8 Da    PI: 6.3996
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna27792.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B382.93e-26130231199
                              EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-E CS
                       B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDf 79 
                              f k+ltpsd++++g +++pk++ae++       ++++ +  +lt +d++g +W +++iyr++++r++lt+GW+ Fv a++L  gD+
  mrna27792.1-v1.0-hybrid 130 FSKILTPSDTSTHGGFSVPKRHAEDFfppldlfQQPPVQ--ELTAKDLHGVQWHFRHIYRGQPKRHLLTSGWSTFVTAKKLVPGDV 213
                              88*****************************97666666..8******************************************** PP

                              EEEEE-SSSEE..EEEEE-S CS
                       B3  80 vvFkldgrsefelvvkvfrk 99 
                              ++F   + +++el+v+++r+
  mrna27792.1-v1.0-hybrid 214 CIFV--RGENGELRVGIRRA 231
                              ****..449999******97 PP
2Auxin_resp98.69.1e-33256337182
               Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 
                              a ha+st+++F+v+Y+P++s++ F++++++++k+ + ++svGmRfkm fe+e+ +e+r+ Gt+++++d d++rWp S+W  L
  mrna27792.1-v1.0-hybrid 256 AFHAISTGTMFTVYYRPWTSPAPFIIPYDQYMKSAQYEYSVGMRFKMWFEGEEGAEKRCEGTIIDINDKDSIRWPSSEWGRL 337
                              689****************************************************************************776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.8E-40123243IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.83E-36125258IPR015300DNA-binding pseudobarrel domain
CDDcd100174.24E-26129230No hitNo description
SMARTSM010197.3E-26130232IPR003340B3 DNA binding domain
PfamPF023624.3E-24130231IPR003340B3 DNA binding domain
PROSITE profilePS5086313.578130232IPR003340B3 DNA binding domain
PfamPF065078.5E-30256338IPR010525Auxin response factor
PfamPF023096.0E-5563611IPR033389AUX/IAA domain
SuperFamilySSF542771.18E-10571652No hitNo description
PROSITE profilePS5174521.345575657IPR000270PB1 domain
PfamPF023097.7E-6616654IPR033389AUX/IAA domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 675 aa     Download sequence    Send to blast
MASSISGEQQ SACPVNNRQG GKDDLDTQLW HTCAGSNIYV PRPGDKVFYI AQGHIEQVEA  60
YADTDSNSAM PKYNLPPKIL CHVVNVQLKA EVHTDEVFAQ ITLLPVTEQD QLSLEDENAP  120
SLPHRTRTYF SKILTPSDTS THGGFSVPKR HAEDFFPPLD LFQQPPVQEL TAKDLHGVQW  180
HFRHIYRGQP KRHLLTSGWS TFVTAKKLVP GDVCIFVRGE NGELRVGIRR ATKTQDNATA  240
SLISGNSMQH GILACAFHAI STGTMFTVYY RPWTSPAPFI IPYDQYMKSA QYEYSVGMRF  300
KMWFEGEEGA EKRCEGTIID INDKDSIRWP SSEWGRLKVQ WDATSDTILH SERLSPWNIK  360
PAESSNKKRA SFPRPHHKRL RIPDPSSPMF SGLARNGPFP SIMPQRQEVF QGQEISEIHA  420
YDLDAPMHDP LHQSPCSSIA FSCENMLTPC NTNQWPPQFT PFGVDSEPFS RSMSVPNINS  480
SGSQELSASK QRSKTQGPFV RPNTLMLFGV NLDNSHSELP SPQVANSTGL LSPCSIPPIS  540
QSSVSETVQL SETSKSFSCV HSETQSKKCC SVSNRSCIKV LKHGAALGRS VDLTRFDGYG  600
ELVSELDQMF DFEGRLIDGS SGWQITYMDD EGDMMLIGDY LWHEFLSMVR KMFICPKDQE  660
VDNLNPGSPN ATSP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-1272336417357Auxin response factor 1
4ldw_A1e-1272336417357Auxin response factor 1
4ldw_B1e-1272336417357Auxin response factor 1
4ldx_A1e-1272336417357Auxin response factor 1
4ldx_B1e-1272336417357Auxin response factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna27792.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011458664.10.0PREDICTED: auxin response factor 23-like isoform X2
TrEMBLA0A2P6PWE40.0A0A2P6PWE4_ROSCH; Auxin response factor
STRINGXP_004292624.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF131052329
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59750.31e-146auxin response factor 1