PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna27696.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family BES1
Protein Properties Length: 646aa    MW: 72815.9 Da    PI: 5.8338
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna27696.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF822136.82.1e-42581812134
                   DUF822   2 gsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaagssas 87 
                              ++gr++++kE+E++k+RER RR i+++++aGLR++Gn++lp+raD+n+Vl+AL+reAGwvve+DGttyr++  +      a s + 
  mrna27696.1-v1.0-hybrid  58 TKGRREREKEKERTKLRERLRRSITSRMLAGLRQYGNFPLPARADMNDVLAALAREAGWVVEPDGTTYRQSPPQI---GGAYSMNL 140
                              789******************************************************************654333...22222222 PP

                   DUF822  88 aspesslqsslkssalaspvesysaspksssfpspssldsislasa....a 134
                              +s+e++++             + +++ + ++++sp+slds+ +a++    +
  mrna27696.1-v1.0-hybrid 141 RSVETPVS----------LECHPQSVARIDESLSPASLDSVVIAEKndrfS 181
                              33344333..........233344444555555555555555554433332 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056871.6E-4059183IPR008540BES1/BZR1 plant transcription factor, N-terminal
Gene3DG3DSA:3.20.20.802.5E-166211639IPR013781Glycoside hydrolase, catalytic domain
SuperFamilySSF514456.32E-154212640IPR017853Glycoside hydrolase superfamily
PfamPF013735.0E-83236614IPR001554Glycoside hydrolase, family 14
PRINTSPR007507.6E-53249263IPR001554Glycoside hydrolase, family 14
PRINTSPR007507.6E-53270288IPR001554Glycoside hydrolase, family 14
PRINTSPR007507.6E-53292313IPR001554Glycoside hydrolase, family 14
PRINTSPR007507.6E-53385407IPR001554Glycoside hydrolase, family 14
PRINTSPR007507.6E-53458477IPR001554Glycoside hydrolase, family 14
PRINTSPR007507.6E-53492508IPR001554Glycoside hydrolase, family 14
PRINTSPR007507.6E-53509520IPR001554Glycoside hydrolase, family 14
PRINTSPR007507.6E-53561583IPR001554Glycoside hydrolase, family 14
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000272Biological Processpolysaccharide catabolic process
GO:0048831Biological Processregulation of shoot system development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0016161Molecular Functionbeta-amylase activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009001anatomyfruit
PO:0007010developmental stagewhole plant fruit ripening stage
PO:0007027developmental stagewhole plant fruit formation stage 70% to final size
Sequence ? help Back to Top
Protein Sequence    Length: 646 aa     Download sequence    Send to blast
MNDDSLQQDL DPQSDQSSDY LPPQPHPLPS QPHPHPRRPR GFAATAAAGS AGPISPSTKG  60
RREREKEKER TKLRERLRRS ITSRMLAGLR QYGNFPLPAR ADMNDVLAAL AREAGWVVEP  120
DGTTYRQSPP QIGGAYSMNL RSVETPVSLE CHPQSVARID ESLSPASLDS VVIAEKNDRF  180
SSGSPAMNSV NCLEADQLMQ HIPSATSFAP APYVPLYVTL VATGFVNNYC QLVDPDGLRQ  240
ELTHLQSLNV DGVVVDCWWG IVECWSPHKY DWSGYRGLFN IVREFKLKLQ VVMAFHEYGR  300
RESGDALIPL PKWILDIGKE NQDIFFTDRE GRRNTECLSW GVDKERVLHG RTGVEVYFDL  360
MRSFRTEFDD LFVEGLISAV EIGLGASGEL KYPSFSERMG WRYPGVGEFQ CYDRYLQQSL  420
QKAAKLRGHS FWARGPDNAG EYNSRPHETG FFCERGDYDS YYGRFFLHWY AKTLIDHADN  480
VLSLASLAFD ETQVIVKVPS VYWWYKTPSH AAELTSGYYN PKNQDGYSLV FEVLKKHSVT  540
VKFVCSAPND GDEALGDPEG LSWQVLNLAW DRGLTVAGEN ALSCYDREGC MRIVELVKPR  600
NDPDRHHFTF FVYQQPSPLV QGTVCFSELD FFIKCMHGDV AGNLV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wdq_A1e-12121363911444Beta-amylase
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00543DAPTransfer from AT5G45300Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna27696.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011465289.10.0PREDICTED: beta-amylase 8
SwissprotQ9FH800.0BAM8_ARATH; Beta-amylase 8
TrEMBLA0A2P6PBE00.0A0A2P6PBE0_ROSCH; Beta-amylase
STRINGXP_004301768.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF119023032
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45300.10.0beta-amylase 2
Publications ? help Back to Top
  1. Soyk S, et al.
    The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation.
    Plant Cell, 2014. 26(4): p. 1746-1763
    [PMID:24748042]