PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna27659.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family AP2
Protein Properties Length: 366aa    MW: 41015.5 Da    PI: 6.949
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna27659.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP238.62.6e-1251107155
                      AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                              s y+GV++++++gr++A+++d  ++n  ++k+ + g ++ +e Aa a++ a++k++g
  mrna27659.1-v1.0-hybrid  51 SIYRGVTRHRWTGRYEAHLWDkNCWNEsQNKKGRQGAYDDEEAAAHAYDLAALKYWG 107
                              57*******************99998898888888********************98 PP
2AP251.23.1e-16150201155
                      AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                              s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa a++ a+ +++g
  mrna27659.1-v1.0-hybrid 150 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAATAYDMAAIEYRG 201
                              89****99**********99966...3.6*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.6E-851107IPR001471AP2/ERF domain
SuperFamilySSF541714.71E-1551116IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.108.0E-1352116IPR001471AP2/ERF domain
SMARTSM003801.1E-1952121IPR001471AP2/ERF domain
PROSITE profilePS5103218.82152115IPR001471AP2/ERF domain
PRINTSPR003674.2E-65364IPR001471AP2/ERF domain
CDDcd000188.49E-24150211No hitNo description
SuperFamilySSF541711.05E-17150211IPR016177DNA-binding domain
PfamPF008475.8E-12150201IPR001471AP2/ERF domain
PROSITE profilePS5103218.334151209IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-17151210IPR001471AP2/ERF domain
SMARTSM003801.2E-24151215IPR001471AP2/ERF domain
PRINTSPR003674.2E-6191211IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MVPNQKANGN NNATTTATAV NNANAVNKTA VTKVKRTRRS VPRDSPPQRS SIYRGVTRHR  60
WTGRYEAHLW DKNCWNESQN KKGRQGAYDD EEAAAHAYDL AALKYWGQDT ILNFPLATYQ  120
KEMNDMEGQS REEYIGSLRR KSSGFSRGVS KYRGVARHHH NGRWEARIGR VFGNKYLYLG  180
TYATQEEAAT AYDMAAIEYR GLNAVTNFDL SRYIKWLKPN GPNNDIIGQA ITNPTTEAKL  240
VGDVTQNPNE LDQTGLGFFH NLAYSPPEET MMAQLPRPTT ATSALGLLLQ SSKFKEMMEM  300
TTATDSSSMI MTSSSTPELH QCTFPDDIQT YFDCQDSTSY GDGDDAMFNE LNSFIPSMFQ  360
CDFTV*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna27659.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011462646.10.0PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060
SwissprotQ94AN41e-107AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A3S8T9370.0A0A3S8T937_FRAAN; Transcription factor AP28
STRINGXP_004298061.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF130034101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79700.24e-90AP2 family protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]