PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna27615.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family NAC
Protein Properties Length: 402aa    MW: 45315.6 Da    PI: 4.7446
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna27615.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM155.91.8e-4861341129
                      NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWk 84 
                              lppGfrF+Ptd elv++yLk+k+ gkkl++ +v++evdiyk+ PwdLp k + ++++ +wyfF++r+kkya+g r nrat+ gyWk
  mrna27615.1-v1.0-hybrid   6 LPPGFRFNPTDVELVQYYLKRKIMGKKLHV-KVVAEVDIYKWAPWDLPdKsCWRSGDLKWYFFCPREKKYASGGRVNRATDCGYWK 90 
                              79****************************.99**************96446777888**************************** PP

                      NAM  85 atgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                              +tgkd++vl  ++e+vg  ktL+f+ grap+ge+t+Wv+heyrle
  mrna27615.1-v1.0-hybrid  91 TTGKDRSVLY-NSEVVGWIKTLIFHGGRAPRGERTNWVLHEYRLE 134
                              **********.999*****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.32E-573156IPR003441NAC domain
PROSITE profilePS5100554.0036156IPR003441NAC domain
PfamPF023655.2E-257133IPR003441NAC domain
SuperFamilySSF1415713.79E-5183264No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    Send to blast
MGKSSLPPGF RFNPTDVELV QYYLKRKIMG KKLHVKVVAE VDIYKWAPWD LPDKSCWRSG  60
DLKWYFFCPR EKKYASGGRV NRATDCGYWK TTGKDRSVLY NSEVVGWIKT LIFHGGRAPR  120
GERTNWVLHE YRLEDKNLAE KGVAQDSHVL CLIFQKDGIG PKSSKQYGAP FKEEDWTDDE  180
VETDISHVNI SETNLVHTNM LEPEPNLTHS YTPEPDIVQA NMHDQVLVNT NITEPHLVYG  240
NMPDPYVVYP NMPQSDFSYA NMSEPYLALP SNHNSSITRT NSHESCVSDI LPPSGNVLQS  300
VCSNYETTDH VSPDEDILSM LNCFTEDGTF SMDHIDKNEK LETLIYSGDA NPIAGVGKHD  360
DTNKDLGGLS KDGYIFPNGA ISGASSENEP YLELFDLDIE W*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-44515614168Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that binds specific DNA sequences on the promoter regions of target genes. {ECO:0000250|UniProtKB:Q9C8W9}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna27615.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004290501.10.0PREDICTED: NAC domain-containing protein 78-like
RefseqXP_011458487.10.0PREDICTED: NAC domain-containing protein 78-like
SwissprotQ9FY821e-96NAC82_ARATH; NAC domain-containing protein 82
TrEMBLA0A2P6PRT70.0A0A2P6PRT7_ROSCH; Putative transcription factor NAM family
STRINGXP_004290501.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33023465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64060.15e-91NAC domain containing protein 103
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Deeken R, et al.
    Identification of Arabidopsis thaliana phloem RNAs provides a search criterion for phloem-based transcripts hidden in complex datasets of microarray experiments.
    Plant J., 2008. 55(5): p. 746-59
    [PMID:18485061]
  3. Ohbayashi I, et al.
    Evidence for a Role of ANAC082 as a Ribosomal Stress Response Mediator Leading to Growth Defects and Developmental Alterations in Arabidopsis.
    Plant Cell, 2017. 29(10): p. 2644-2660
    [PMID:28899981]