PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna27614.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | NAC | ||||||||
Protein Properties | Length: 397aa MW: 44510.9 Da PI: 4.6511 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 151.5 | 4e-47 | 7 | 134 | 2 | 129 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWka 85 ppGfrF+Ptd elv++yLk+kv gk++++ +vi++vdiyk+ PwdLp k + + ++ +wyfF++r+ kyatg r nrat +g+Wk mrna27614.1-v1.0-hybrid 7 PPGFRFSPTDVELVKYYLKRKVMGKRVRV-QVIADVDIYKYAPWDLPdKsCWRYGDLKWYFFCPREMKYATGARVNRATGAGFWKM 91 9***************************9.99**************96446666888***************************** PP NAM 86 tgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 +gkd++v +g++vg ktLvf+ gr p+ge+tdWv+heyrle mrna27614.1-v1.0-hybrid 92 SGKDRSVNY-NGQVVGWIKTLVFHIGRPPRGERTDWVLHEYRLE 134 ********9.99******************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.24E-57 | 4 | 156 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 53.625 | 6 | 156 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.8E-24 | 7 | 133 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 397 aa Download sequence Send to blast |
MGKAAFPPGF RFSPTDVELV KYYLKRKVMG KRVRVQVIAD VDIYKYAPWD LPDKSCWRYG 60 DLKWYFFCPR EMKYATGARV NRATGAGFWK MSGKDRSVNY NGQVVGWIKT LVFHIGRPPR 120 GERTDWVLHE YRLEDKDLAD MGMPQESYVL CVIFQKEGAG PKLSAQYGAP FKEEDWTDDE 180 VEICLDTVPH ANRPELDLVL PRGYNSPGPY STDSPEGMCI GPSSESCISD AVPHSCNVLH 240 SVSSNSATTE KLCVSANGDI LSMLDCFAEE SIFPINGNDK NKELDNLIRS GNTSTTQKLD 300 ILNSRNVDAT EELDNILHSG NANATADFHR SDIYRDLADL GNLGRVEVGF NLSNEHDSLY 360 TMDEIFELGD LDRPLNSDTS MYNLPSLHTE LEEMPL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 5e-46 | 1 | 162 | 12 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 5e-46 | 1 | 162 | 12 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 5e-46 | 1 | 162 | 12 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 5e-46 | 1 | 162 | 12 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 5e-46 | 1 | 162 | 15 | 174 | NAC domain-containing protein 19 |
3swm_B | 5e-46 | 1 | 162 | 15 | 174 | NAC domain-containing protein 19 |
3swm_C | 5e-46 | 1 | 162 | 15 | 174 | NAC domain-containing protein 19 |
3swm_D | 5e-46 | 1 | 162 | 15 | 174 | NAC domain-containing protein 19 |
3swp_A | 5e-46 | 1 | 162 | 15 | 174 | NAC domain-containing protein 19 |
3swp_B | 5e-46 | 1 | 162 | 15 | 174 | NAC domain-containing protein 19 |
3swp_C | 5e-46 | 1 | 162 | 15 | 174 | NAC domain-containing protein 19 |
3swp_D | 5e-46 | 1 | 162 | 15 | 174 | NAC domain-containing protein 19 |
4dul_A | 5e-46 | 1 | 162 | 12 | 171 | NAC domain-containing protein 19 |
4dul_B | 5e-46 | 1 | 162 | 12 | 171 | NAC domain-containing protein 19 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that binds specific DNA sequences on the promoter regions of target genes. {ECO:0000250|UniProtKB:Q9C8W9}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna27614.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004290500.1 | 0.0 | PREDICTED: NAC domain-containing protein 78-like | ||||
Refseq | XP_011458484.1 | 0.0 | PREDICTED: NAC domain-containing protein 78-like | ||||
Refseq | XP_011458485.1 | 0.0 | PREDICTED: NAC domain-containing protein 78-like | ||||
Refseq | XP_011458486.1 | 0.0 | PREDICTED: NAC domain-containing protein 78-like | ||||
Swissprot | Q9FY82 | 2e-94 | NAC82_ARATH; NAC domain-containing protein 82 | ||||
TrEMBL | A0A2P6PRT4 | 0.0 | A0A2P6PRT4_ROSCH; Putative transcription factor NAM family | ||||
STRING | XP_004290500.1 | 0.0 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3302 | 34 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G09330.4 | 8e-97 | NAC domain containing protein 82 |
Link Out ? help Back to Top | |
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Phytozome | mrna27614.1-v1.0-hybrid |
Publications ? help Back to Top | |||
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