PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna27614.1-v1.0-hybrid
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family NAC
Protein Properties Length: 397aa    MW: 44510.9 Da    PI: 4.6511
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna27614.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM151.54e-4771342129
                      NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWka 85 
                              ppGfrF+Ptd elv++yLk+kv gk++++ +vi++vdiyk+ PwdLp k + + ++ +wyfF++r+ kyatg r nrat +g+Wk 
  mrna27614.1-v1.0-hybrid   7 PPGFRFSPTDVELVKYYLKRKVMGKRVRV-QVIADVDIYKYAPWDLPdKsCWRYGDLKWYFFCPREMKYATGARVNRATGAGFWKM 91 
                              9***************************9.99**************96446666888***************************** PP

                      NAM  86 tgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                              +gkd++v   +g++vg  ktLvf+ gr p+ge+tdWv+heyrle
  mrna27614.1-v1.0-hybrid  92 SGKDRSVNY-NGQVVGWIKTLVFHIGRPPRGERTDWVLHEYRLE 134
                              ********9.99******************************85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.24E-574156IPR003441NAC domain
PROSITE profilePS5100553.6256156IPR003441NAC domain
PfamPF023651.8E-247133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    Send to blast
MGKAAFPPGF RFSPTDVELV KYYLKRKVMG KRVRVQVIAD VDIYKYAPWD LPDKSCWRYG  60
DLKWYFFCPR EMKYATGARV NRATGAGFWK MSGKDRSVNY NGQVVGWIKT LVFHIGRPPR  120
GERTDWVLHE YRLEDKDLAD MGMPQESYVL CVIFQKEGAG PKLSAQYGAP FKEEDWTDDE  180
VEICLDTVPH ANRPELDLVL PRGYNSPGPY STDSPEGMCI GPSSESCISD AVPHSCNVLH  240
SVSSNSATTE KLCVSANGDI LSMLDCFAEE SIFPINGNDK NKELDNLIRS GNTSTTQKLD  300
ILNSRNVDAT EELDNILHSG NANATADFHR SDIYRDLADL GNLGRVEVGF NLSNEHDSLY  360
TMDEIFELGD LDRPLNSDTS MYNLPSLHTE LEEMPL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-46116212171NO APICAL MERISTEM PROTEIN
1ut4_B5e-46116212171NO APICAL MERISTEM PROTEIN
1ut7_A5e-46116212171NO APICAL MERISTEM PROTEIN
1ut7_B5e-46116212171NO APICAL MERISTEM PROTEIN
3swm_A5e-46116215174NAC domain-containing protein 19
3swm_B5e-46116215174NAC domain-containing protein 19
3swm_C5e-46116215174NAC domain-containing protein 19
3swm_D5e-46116215174NAC domain-containing protein 19
3swp_A5e-46116215174NAC domain-containing protein 19
3swp_B5e-46116215174NAC domain-containing protein 19
3swp_C5e-46116215174NAC domain-containing protein 19
3swp_D5e-46116215174NAC domain-containing protein 19
4dul_A5e-46116212171NAC domain-containing protein 19
4dul_B5e-46116212171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that binds specific DNA sequences on the promoter regions of target genes. {ECO:0000250|UniProtKB:Q9C8W9}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna27614.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004290500.10.0PREDICTED: NAC domain-containing protein 78-like
RefseqXP_011458484.10.0PREDICTED: NAC domain-containing protein 78-like
RefseqXP_011458485.10.0PREDICTED: NAC domain-containing protein 78-like
RefseqXP_011458486.10.0PREDICTED: NAC domain-containing protein 78-like
SwissprotQ9FY822e-94NAC82_ARATH; NAC domain-containing protein 82
TrEMBLA0A2P6PRT40.0A0A2P6PRT4_ROSCH; Putative transcription factor NAM family
STRINGXP_004290500.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33023465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G09330.48e-97NAC domain containing protein 82
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Deeken R, et al.
    Identification of Arabidopsis thaliana phloem RNAs provides a search criterion for phloem-based transcripts hidden in complex datasets of microarray experiments.
    Plant J., 2008. 55(5): p. 746-59
    [PMID:18485061]
  3. Ohbayashi I, et al.
    Evidence for a Role of ANAC082 as a Ribosomal Stress Response Mediator Leading to Growth Defects and Developmental Alterations in Arabidopsis.
    Plant Cell, 2017. 29(10): p. 2644-2660
    [PMID:28899981]