PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna27604.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family ERF
Protein Properties Length: 465aa    MW: 50541.2 Da    PI: 7.389
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna27604.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.31e-19232281255
                      AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                              +y+GVr+++ +g+W+AeIrdp     +  +r++lg+f tae Aa+a+++a+++++g
  mrna27604.1-v1.0-hybrid 232 RYRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFETAEAAARAYDEAALRFRG 281
                              7********.**********7.....337*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003807.3E-36232295IPR001471AP2/ERF domain
PfamPF008471.7E-13232281IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-32232290IPR001471AP2/ERF domain
SuperFamilySSF541713.27E-22232290IPR016177DNA-binding domain
PROSITE profilePS5103225.646232289IPR001471AP2/ERF domain
PRINTSPR003671.8E-11233244IPR001471AP2/ERF domain
CDDcd000189.30E-15240291No hitNo description
PRINTSPR003671.8E-11255271IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009005anatomyroot
PO:0007134developmental stagesporophyte vegetative stage
Sequence ? help Back to Top
Protein Sequence    Length: 465 aa     Download sequence    Send to blast
MCFLKVANQR RSSSGDGRPF QEQNDDVVPV DYEEEARRDQ LLMSNQLAVE EGRAQPHQTS  60
TVSPSMYLGY SRPAAEMSAM VSALTHVVSG QRHVVSGSSG GVASSFGQVY SAANANSPPL  120
SAFSTSNNNN NTSSSSGSWV GQKRGREEEQ IHQALLMDQS TRPYRGAYVD FRATLPESST  180
GATTTTTVNE DDTKSVTTAA STVKATASTA VTVTPSASDT VSTEETGERR RRYRGVRQRP  240
WGKWAAEIRD PHKAARVWLG TFETAEAAAR AYDEAALRFR GNRAKLNFPE NVRLIPPQQP  300
LQSYAQSINS NSAPARLAPN PSVRPLQPPP QPLQQQQPLY QTQSFQGSPD FLRDYMDYSH  360
LLQSSIDVHS QQQPQPTNLL EQMYYNSQLA SLQSSLLQQP PPSSSTSSST LPSSTSSSAS  420
FPLFFSDHQQ QLSFFGQQNQ NPGGPSGFPA PSWSQSGHNH SSSG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-23231292163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1227232ERRRRY
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna27604.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004290493.10.0PREDICTED: ethylene-responsive transcription factor ABR1-like isoform X1
TrEMBLA0A3Q8TDK20.0A0A3Q8TDK2_FRAAN; Transcription factor ERF91
STRINGXP_004290493.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49193253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64750.11e-21ERF family protein