PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna27595.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family B3
Protein Properties Length: 742aa    MW: 83986.5 Da    PI: 6.6487
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna27595.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B346.66.1e-154305121099
                              HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
                       B3  10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                                 s++  +p  f ++++ k  ++++  l+ ++ ++W v++  +k +g++++ kGWk+Fv+ ngLk+g+f+vF+++g+++f  +v 
  mrna27595.1-v1.0-hybrid 430 IRDSNIRQIPPAFYKHFDWK--GPQQTYLR-TQVKTWLVNV--EKIDGKFFFLKGWKRFVHGNGLKVGEFLVFRYIGNTRF--FVD 508
                              55667788999999777444..33344544.589*******..**********************************9888..898 PP

                              EE-S CS
                       B3  96 vfrk 99 
                              ++ +
  mrna27595.1-v1.0-hybrid 509 IYGR 512
                              8765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd147981.08E-332128No hitNo description
SuperFamilySSF525402.89E-46155368IPR027417P-loop containing nucleoside triphosphate hydrolase
Gene3DG3DSA:3.40.50.3003.1E-14169312IPR027417P-loop containing nucleoside triphosphate hydrolase
PfamPF009311.6E-47170366IPR002182NB-ARC
PRINTSPR003642.5E-7188203No hitNo description
CDDcd019830.00721188206No hitNo description
PRINTSPR003642.5E-7267281No hitNo description
SuperFamilySSF520586.29E-14349441IPR032675Leucine-rich repeat domain, L domain-like
Gene3DG3DSA:3.80.10.101.8E-14359436IPR032675Leucine-rich repeat domain, L domain-like
PROSITE profilePS5086312.858421513IPR003340B3 DNA binding domain
SMARTSM010196.4E-10425513IPR003340B3 DNA binding domain
PfamPF023622.6E-12434512IPR003340B3 DNA binding domain
SuperFamilySSF1019361.29E-17434515IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.1E-16437515IPR015300DNA-binding pseudobarrel domain
CDDcd100171.38E-13438510No hitNo description
Gene3DG3DSA:2.40.330.106.9E-4669713IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0043531Molecular FunctionADP binding
Sequence ? help Back to Top
Protein Sequence    Length: 742 aa     Download sequence    Send to blast
MASPAIDLLI GKIVSFLESE VSLLEGVHDE LGEVKLELLT MKAFLEDAER KGALGEVEKT  60
WVANVRDVSI DVEDIMDEFT YQTNKRRSWG PFTKAFSKTL RLPQNIWERH RIATKLQKIM  120
KTIKDIPERS RRYGSLRIEG STSHHVGNRV EVCGESSLFL KDDDLVGITD AKKKIVGWLS  180
SGHSQRTVIT VVGMGGSGKT TLVASIFNSQ TVQHFNCYTW ITVSQSYTIE DLFRVMINEL  240
FAAAQIDVPQ NLSNMSYRHL VELLVRYLQP RRYMIVLDDV WDTNLWRSID VALPKGTHGS  300
RIMLTTRNKD IASLAFGVES HVHQIEPLNT SDAWDLFSRR AFSSVRDKSC PPELQLIARE  360
LMMTSSSLEI VLPSGFKLLR VLDLKYAPIH ELPDEIMKCF NLTSLNLKGT EVRKLPKQIG  420
NLQNLETLDI RDSNIRQIPP AFYKHFDWKG PQQTYLRTQV KTWLVNVEKI DGKFFFLKGW  480
KRFVHGNGLK VGEFLVFRYI GNTRFFVDIY GRNTCKKDFI KGVEKSEKES HGNEDNQGVA  540
EGTRHGQATN SIPIKEEVID TEYETSLHPL TRNTGKDVAL ERANTSKSED GDKQENNDDD  600
DEEEEDDEEE DQEDDDDSIK IPHDLPPCPK TKEISPLGPV PICIKRNRSS SRSSTNIGGE  660
DVVLQKAYAF KSAKPSFVVP MYLSYVHGGF LNVPSSFATR YLTKRPSQVI LQGSLKVAAK  720
GHFPLAVNLP KLDEDCRDSQ A*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j5t_C2e-3613861376Disease resistance RPP13-like protein 4
6j5t_F2e-3613861376Disease resistance RPP13-like protein 4
6j5t_G2e-3613861376Disease resistance RPP13-like protein 4
6j5t_L2e-3613861376Disease resistance RPP13-like protein 4
6j5t_O2e-3613861376Disease resistance RPP13-like protein 4
6j5u_A2e-3613861376Disease resistance RPP13-like protein 4
6j5v_A2e-3613861376Disease resistance RPP13-like protein 4
6j5w_A2e-3613861376Disease resistance RPP13-like protein 4
6j6i_C2e-3613861376Disease resistance RPP13-like protein 4
6j6i_F2e-3613861376Disease resistance RPP13-like protein 4
6j6i_G2e-3613861376Disease resistance RPP13-like protein 4
6j6i_L2e-3613861376Disease resistance RPP13-like protein 4
6j6i_O2e-3613861376Disease resistance RPP13-like protein 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna27595.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM0752401e-178AM075240.1 Rosa hybrid cultivar partial brp32 gene for putative LZ-NBS-LRR resistance protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011458476.10.0PREDICTED: disease resistance protein RPM1-like isoform X1
TrEMBLA0A2P6PRR20.0A0A2P6PRR2_ROSCH; Putative P-loop containing nucleoside triphosphate hydrolase, leucine-rich repeat domain, L
STRINGXP_004292512.10.0(Fragaria vesca)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.12e-12B3 family protein