PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna27489.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family GRAS
Protein Properties Length: 632aa    MW: 71783.4 Da    PI: 6.2533
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna27489.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS2813.4e-86914682368
                     GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsev 87 
                              ++ Ll  A+av++++ + a + L++l + +s  gd++qR++ayf+ +Laarl+   s  ++ ++ ++t+    +ee+ a+++++ v
  mrna27489.1-v1.0-hybrid  91 IRMLLITATAVNENNVSSAFENLTELYKSVSLCGDSVQRVVAYFADGLAARLLTRKSPFFDMISKEPTH----EEEFVAFTALYRV 172
                              6789999***********************************************999999999888886....78889999***** PP

                     GRAS  88 sPilkfshltaNqaIleavege.....ervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesgskeeleetgerLa 166
                              sP+++f+h+taNqaI ea+e+e     + +H+iDfd+s+G+QWp+L+q+L+++   ++  slRiTg+g+    s +el+et++rL 
  mrna27489.1-v1.0-hybrid 173 SPYYQFAHFTANQAIIEAFEKEedknnRSLHVIDFDVSYGFQWPSLIQSLSEKGssGSRISLRITGFGR----SLDELRETENRLL 254
                              ********************9988777789*********************998644455*********....9************ PP

                     GRAS 167 kfAeel.gvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnse 251
                              +f + + ++ fef+ l    l+  +l +Lr k++E++aVnlv++l +l  ++ ++++     Lk v  l+P +v +veqe +++  
  mrna27489.1-v1.0-hybrid 255 SFSKGCrNLVFEFQGL----LHGSNLINLRKKRNETIAVNLVFHLNSLN-NDIKISD----SLKSVHLLNPSIVMLVEQEGSRSPR 331
                              ***98648*******8....7788889******************9997.4555555....8************************ PP

                     GRAS 252 sFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegae.rrerhetlekWrerleeaGFkpvplsekaakq 336
                              sFl rf+e+l+y++a+fdsl+  lp es er  +E+  lg+ei++++   + +  r+ +++ e+W++r+e+ GF+ v+ls+k   q
  mrna27489.1-v1.0-hybrid 332 SFLSRFMESLHYFAAMFDSLDDCLPLESTERLRIEKNHLGKEIKSMLNYDNIMeDRKTEKSTETWKARMESHGFEGVNLSSKSKIQ 417
                              ***********************************************9988762455566789*********************** PP

                     GRAS 337 aklllr........kvksdgyrveee................sgslvlgWkdrpLv 368
                              a+lll+        ++++dg     +                  +l lgW+dr+++
  mrna27489.1-v1.0-hybrid 418 ARLLLKirthycplQFEGDG-----SngsstaagfrvferddGRTLSLGWQDRTII 468
                              ****9832222221122222.....0222222333333334244455888888776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098548.40664435IPR005202Transcription factor GRAS
PfamPF035141.2E-8391468IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 632 aa     Download sequence    Send to blast
MEDIDEEGDE LLNLSLAIVT NSGGERMKKR KRRDNTTSSD FSSSSYEGCE GKIFSLLQMR  60
EQMLKLEHKK KRGGAGNDIV DELDGKGLQL IRMLLITATA VNENNVSSAF ENLTELYKSV  120
SLCGDSVQRV VAYFADGLAA RLLTRKSPFF DMISKEPTHE EEFVAFTALY RVSPYYQFAH  180
FTANQAIIEA FEKEEDKNNR SLHVIDFDVS YGFQWPSLIQ SLSEKGSSGS RISLRITGFG  240
RSLDELRETE NRLLSFSKGC RNLVFEFQGL LHGSNLINLR KKRNETIAVN LVFHLNSLNN  300
DIKISDSLKS VHLLNPSIVM LVEQEGSRSP RSFLSRFMES LHYFAAMFDS LDDCLPLEST  360
ERLRIEKNHL GKEIKSMLNY DNIMEDRKTE KSTETWKARM ESHGFEGVNL SSKSKIQARL  420
LLKIRTHYCP LQFEGDGSNG SSTAAGFRVF ERDDGRTLSL GWQDRTIIWG GTPSENFTIK  480
FAYKLLYDDH GIENCPWLKN WSINIPPKLE ILLWTFDTPE TMIHLFRDCP MAMMVWSSFN  540
IPTNMWNVFT LNWDDWLFLC FCQVQSANDR GMWRLYHGLN QAVGFHKLNA DGSRTRSGEM  600
SLGGVTKDST GCWSGGFMIN IGTGDVLQAE A*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-519846827373Protein SCARECROW
5b3h_A1e-519846826372Protein SCARECROW
5b3h_D1e-519846826372Protein SCARECROW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12732KKRKRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna27489.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004292490.10.0PREDICTED: scarecrow-like protein 18
TrEMBLA0A2P6PR660.0A0A2P6PR66_ROSCH; Putative transcription factor GRAS family
STRINGXP_004292490.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62002952
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54220.12e-51GRAS family protein