PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna27422.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | bHLH | ||||||||
Protein Properties | Length: 334aa MW: 37376.9 Da PI: 5.6271 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 44.4 | 3e-14 | 69 | 120 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++ +hn+ Er RR++iN+ ++ Lr+l+P + ++k+ls +++ ++ +YI +Lq mrna27422.1-v1.0-hybrid 69 KKLNHNASERDRRKKINNLYSSLRSLVPAD---HAKRLSIPATVSRVLKYIPELQ 120 6789**************************...9******************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.062 | 68 | 119 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.5E-11 | 69 | 120 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 7.3E-14 | 69 | 137 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 5.1E-15 | 69 | 138 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 7.37E-11 | 69 | 124 | No hit | No description |
SMART | SM00353 | 1.6E-9 | 74 | 125 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010106 | Biological Process | cellular response to iron ion starvation | ||||
GO:0055072 | Biological Process | iron ion homeostasis | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009005 | anatomy | root | ||||
PO:0007134 | developmental stage | sporophyte vegetative stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 334 aa Download sequence Send to blast |
MLALSPPLFS TIGWPLEDHS ISHDHDNYYS AESSLLHFPT TLQPQFDQLD HSTPSTAVSG 60 ESNISSMVKK LNHNASERDR RKKINNLYSS LRSLVPADHA KRLSIPATVS RVLKYIPELQ 120 QQVEGLIQKR DELLSNMSKQ ENVILQEEKQ LQSTARRSGS SLSAVSTSRL SDTELAIQIS 180 TVKSTHNIIS RILQSLEEDG LEILNASTFE SSGGRVFYNL HLQVDMFYRL ECENLSHKLM 240 SFYGLVGGED CGEGLSFKRR ERDAGARVGI WREGGNGDVE YWPEVFLALE YVVEAAVADL 300 VYGGEVDEGP VGDVVAMRRW RRSRESKESE SRC* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna27422.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004290411.1 | 1e-177 | PREDICTED: transcription factor ORG2-like | ||||
TrEMBL | A0A2P6PQW6 | 1e-156 | A0A2P6PQW6_ROSCH; Putative transcription factor bHLH family | ||||
STRING | XP_004290411.1 | 1e-176 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2402 | 33 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G56970.1 | 9e-54 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | mrna27422.1-v1.0-hybrid |