PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna27337.1-v1.0-hybrid
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family DBB
Protein Properties Length: 319aa    MW: 34447.9 Da    PI: 6.336
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna27337.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box20.31.2e-063478442
                 zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                               C+ +e  e++  C  ++  lC  C ++ H        H++vpl
  mrna27337.1-v1.0-hybrid 34 IQCNVCEAAEATVLCCADEAALCWACDEKVHAAnklaskHQRVPL 78
                             57******99*********************66899999999986 PP

2zf-B_box27.65.8e-0983115335
                 zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHk 35 
                               +kC+ ++e    +fC +++ llC++C +++H 
  mrna27337.1-v1.0-hybrid  83 LPKCDICQEAVGYFFCLEDRALLCRKCDVAIHT 115
                              589*******9*********************3 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.7223178IPR000315B-box-type zinc finger
SMARTSM003361.1E-123178IPR000315B-box-type zinc finger
CDDcd000212.97E-73478No hitNo description
SMARTSM003366.2E-1681128IPR000315B-box-type zinc finger
PROSITE profilePS501199.00181128IPR000315B-box-type zinc finger
CDDcd000212.68E-884128No hitNo description
PfamPF006434.4E-784124IPR000315B-box-type zinc finger
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009641Biological Processshade avoidance
GO:0009658Biological Processchloroplast organization
GO:0009718Biological Processanthocyanin-containing compound biosynthetic process
GO:0010099Biological Processregulation of photomorphogenesis
GO:0015995Biological Processchlorophyll biosynthetic process
GO:0016607Cellular Componentnuclear speck
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MTHEPSIKLS HPSCTSHIHP KFQNIKKRLK EMKIQCNVCE AAEATVLCCA DEAALCWACD  60
EKVHAANKLA SKHQRVPLSA SHLPKCDICQ EAVGYFFCLE DRALLCRKCD VAIHTVNSFV  120
SGHRRFLLTG IKVGLEPNPP GRSGPGGGVA GSSSSVKSES GAVAKCEGNN QLAEECKVAP  180
ESVAGMGFSG GSGAGAGSVP QWPMEEFLRF ADFDQSFGYM DNGSSKADCG KLGDSDSSVL  240
RSPEEELEDY ECIGQVPELS WMVPQVPSPP TSSGLYWPKT YQNPLDSAVF VPDVNYSDMQ  300
NSLHYQQNGT VSKRRRQL*
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of seedling photomorphogenesis and light-regulated inhibition of hypocotyl elongation, independently and in concert with HY5 and BBX21 (PubMed:18540109, PubMed:18796637, PubMed:18182030, PubMed:21427283). Acts as a positive regulator of de-etiolation and influences chloroplast biogenesis and function through regulation of genes encoding chloroplast proteins (PubMed:18182030). Acts downstream of COP1 and plays an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). Regulates the expression of genes responsive to light hormone signals which may contribute to optimal seedling development (PubMed:21427283). {ECO:0000269|PubMed:18182030, ECO:0000269|PubMed:18540109, ECO:0000269|PubMed:18796637, ECO:0000269|PubMed:21070414, ECO:0000269|PubMed:21427283}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna27337.1-v1.0-hybrid
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. {ECO:0000269|PubMed:18182030}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004294165.10.0PREDICTED: B-box zinc finger protein 22
SwissprotQ9SYM22e-87BBX22_ARATH; B-box zinc finger protein 22
TrEMBLA0A2P6Q9N91e-157A0A2P6Q9N9_ROSCH; Putative transcription factor interactor and regulator LIM family
STRINGXP_004294165.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45663453
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78600.14e-63light-regulated zinc finger protein 1