PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna27337.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | DBB | ||||||||
Protein Properties | Length: 319aa MW: 34447.9 Da PI: 6.336 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 20.3 | 1.2e-06 | 34 | 78 | 4 | 42 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 C+ +e e++ C ++ lC C ++ H H++vpl mrna27337.1-v1.0-hybrid 34 IQCNVCEAAEATVLCCADEAALCWACDEKVHAAnklaskHQRVPL 78 57******99*********************66899999999986 PP | |||||||
2 | zf-B_box | 27.6 | 5.8e-09 | 83 | 115 | 3 | 35 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHk 35 +kC+ ++e +fC +++ llC++C +++H mrna27337.1-v1.0-hybrid 83 LPKCDICQEAVGYFFCLEDRALLCRKCDVAIHT 115 589*******9*********************3 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 10.722 | 31 | 78 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 1.1E-12 | 31 | 78 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 2.97E-7 | 34 | 78 | No hit | No description |
SMART | SM00336 | 6.2E-16 | 81 | 128 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 9.001 | 81 | 128 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 2.68E-8 | 84 | 128 | No hit | No description |
Pfam | PF00643 | 4.4E-7 | 84 | 124 | IPR000315 | B-box-type zinc finger |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009641 | Biological Process | shade avoidance | ||||
GO:0009658 | Biological Process | chloroplast organization | ||||
GO:0009718 | Biological Process | anthocyanin-containing compound biosynthetic process | ||||
GO:0010099 | Biological Process | regulation of photomorphogenesis | ||||
GO:0015995 | Biological Process | chlorophyll biosynthetic process | ||||
GO:0016607 | Cellular Component | nuclear speck | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 319 aa Download sequence Send to blast |
MTHEPSIKLS HPSCTSHIHP KFQNIKKRLK EMKIQCNVCE AAEATVLCCA DEAALCWACD 60 EKVHAANKLA SKHQRVPLSA SHLPKCDICQ EAVGYFFCLE DRALLCRKCD VAIHTVNSFV 120 SGHRRFLLTG IKVGLEPNPP GRSGPGGGVA GSSSSVKSES GAVAKCEGNN QLAEECKVAP 180 ESVAGMGFSG GSGAGAGSVP QWPMEEFLRF ADFDQSFGYM DNGSSKADCG KLGDSDSSVL 240 RSPEEELEDY ECIGQVPELS WMVPQVPSPP TSSGLYWPKT YQNPLDSAVF VPDVNYSDMQ 300 NSLHYQQNGT VSKRRRQL* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as positive regulator of seedling photomorphogenesis and light-regulated inhibition of hypocotyl elongation, independently and in concert with HY5 and BBX21 (PubMed:18540109, PubMed:18796637, PubMed:18182030, PubMed:21427283). Acts as a positive regulator of de-etiolation and influences chloroplast biogenesis and function through regulation of genes encoding chloroplast proteins (PubMed:18182030). Acts downstream of COP1 and plays an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). Regulates the expression of genes responsive to light hormone signals which may contribute to optimal seedling development (PubMed:21427283). {ECO:0000269|PubMed:18182030, ECO:0000269|PubMed:18540109, ECO:0000269|PubMed:18796637, ECO:0000269|PubMed:21070414, ECO:0000269|PubMed:21427283}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna27337.1-v1.0-hybrid |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By light. {ECO:0000269|PubMed:18182030}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004294165.1 | 0.0 | PREDICTED: B-box zinc finger protein 22 | ||||
Swissprot | Q9SYM2 | 2e-87 | BBX22_ARATH; B-box zinc finger protein 22 | ||||
TrEMBL | A0A2P6Q9N9 | 1e-157 | A0A2P6Q9N9_ROSCH; Putative transcription factor interactor and regulator LIM family | ||||
STRING | XP_004294165.1 | 0.0 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4566 | 34 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G78600.1 | 4e-63 | light-regulated zinc finger protein 1 |
Link Out ? help Back to Top | |
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Phytozome | mrna27337.1-v1.0-hybrid |