PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna27313.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family BES1
Protein Properties Length: 433aa    MW: 47024.5 Da    PI: 6.8721
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna27313.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF822204.53.2e-63762181149
                   DUF822   1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaagssa 86 
                              ++++r p+wkErEnnkrRERrRRaiaaki+aGLR++Gnyklpk++DnneVlkALc+eAGw+ve DGttyrkg+kp e+++++  sa
  mrna27313.1-v1.0-hybrid  76 TSGTRLPSWKERENNKRRERRRRAIAAKIFAGLRMYGNYKLPKHCDNNEVLKALCNEAGWTVELDGTTYRKGCKPVERMDIVDGSA 161
                              5899********************************************************************************** PP

                   DUF822  87 saspesslqsslkssalaspvesysaspksssfpspssldsislasa..asllpvlsvlslvsss 149
                               asp+ss++        +s  +sy++sp sssfpsp+s++ + +++   +sl+p+l++ls+ sss
  mrna27313.1-v1.0-hybrid 162 AASPCSSYH--------PSNYASYNPSPGSSSFPSPASSSYAAHQNVdgSSLIPWLKHLSSGSSS 218
                              *********........999****************9999888876678**********996665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056875.7E-6378213IPR008540BES1/BZR1 plant transcription factor, N-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 433 aa     Download sequence    Send to blast
MATRGEETNA FVRVTDARWE KRNEYNVLGF GSTEVASSLP FEKCHVHAGA QLESLSFHDP  60
GDIGMYIIQL HAGEMTSGTR LPSWKERENN KRRERRRRAI AAKIFAGLRM YGNYKLPKHC  120
DNNEVLKALC NEAGWTVELD GTTYRKGCKP VERMDIVDGS AAASPCSSYH PSNYASYNPS  180
PGSSSFPSPA SSSYAAHQNV DGSSLIPWLK HLSSGSSSAS SSKLPNMYIH GGSISAPVTP  240
PLSSPTCRTP RMNTDWEQSA QPGWGGQQHS FLPSSTPPSP GRQIIPSPEW FSGIQIPHGP  300
TSPTFSLVSS NPFGFKEEAL AGGGSRMWTP GQSGTCSPAI AAGSDHTADI PMSEVISDEF  360
AFGSCNTAGL VKAWEGERIH EESGSDDLEL TLGCSKTRQV NLVLKFNLVD QMFELLIYSF  420
LPFHLQVNSW TK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zd4_A2e-2280151372443Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_B2e-2280151372443Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_C2e-2280151372443Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_D2e-2280151372443Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00248DAPTransfer from AT1G78700Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna27313.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004294130.10.0PREDICTED: BES1/BZR1 homolog protein 4-like
SwissprotQ9ZV881e-141BEH4_ARATH; BES1/BZR1 homolog protein 4
TrEMBLA0A2P6Q9T40.0A0A2P6Q9T4_ROSCH; Putative transcription factor BES/BZR family
STRINGXP_004294130.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26613375
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78700.11e-123BES1/BZR1 homolog 4