PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna27279.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family NAC
Protein Properties Length: 275aa    MW: 31748.1 Da    PI: 4.5074
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna27279.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM79.29.3e-25121441128
                      NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiy.kvePwdLpkkvkaeek.......ewyfFskrdkkyatgkrknra 77 
                              l pG+rF P +eel+  yL +kv+g++++ ee  i + d+y k +Pw++ +++k+++k       ++yfF++r+k++ +g+rk r+
  mrna27279.1-v1.0-hybrid  12 LLPGYRFCPMEEELILSYLYPKVKGEEVPGEEYlIFNSDLYgKNDPWEIWNMYKERRKndlrfsqDLYFFTQRKKRTVNGSRKGRT 97 
                              579************************999887799999994569****743333222223344467******************* PP

                      NAM  78 tksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                              + sg+Wka  +  +v + +g++vg +  + +   ++++ e+ +W+m ey+l
  mrna27279.1-v1.0-hybrid  98 VGSGTWKAVSS-DDVSA-GGTVVGHRSRFSYE--NKESVEHGRWIMLEYEL 144
                              *******9987.56777.899*********98..5555569********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.19E-2710160IPR003441NAC domain
PROSITE profilePS5100530.79512161IPR003441NAC domain
PfamPF023659.2E-1714144IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MEIHEDGSDS HLLPGYRFCP MEEELILSYL YPKVKGEEVP GEEYLIFNSD LYGKNDPWEI  60
WNMYKERRKN DLRFSQDLYF FTQRKKRTVN GSRKGRTVGS GTWKAVSSDD VSAGGTVVGH  120
RSRFSYENKE SVEHGRWIML EYELERSQDV HKYVLCKLRK NKGSKEKGKR VDEDDQEKLA  180
TGDDMPDDFP ALEEYKNVKQ EESEIKQGVE DQGMHADGDD VCDAGPSLSS ELQEAENCWK  240
QYLNPIIFVD DDNLVPPYAD ALQWEESNIT RFGE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-161216717171NO APICAL MERISTEM PROTEIN
1ut4_B2e-161216717171NO APICAL MERISTEM PROTEIN
1ut7_A2e-161216717171NO APICAL MERISTEM PROTEIN
1ut7_B2e-161216717171NO APICAL MERISTEM PROTEIN
3swm_A2e-161216720174NAC domain-containing protein 19
3swm_B2e-161216720174NAC domain-containing protein 19
3swm_C2e-161216720174NAC domain-containing protein 19
3swm_D2e-161216720174NAC domain-containing protein 19
3swp_A2e-161216720174NAC domain-containing protein 19
3swp_B2e-161216720174NAC domain-containing protein 19
3swp_C2e-161216720174NAC domain-containing protein 19
3swp_D2e-161216720174NAC domain-containing protein 19
4dul_A2e-161216717171NAC domain-containing protein 19
4dul_B2e-161216717171NAC domain-containing protein 19
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16686RRKNDLRFSQDLYFFTQRKKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna27279.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011460797.10.0PREDICTED: NAC domain-containing protein 48-like
STRINGXP_004306296.11e-50(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF55724133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77450.11e-21NAC domain containing protein 32