PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna27240.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family NAC
Protein Properties Length: 371aa    MW: 43273 Da    PI: 4.6049
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna27240.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM76.85.1e-24101501128
                      NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykv.ePwdLpk.....kvka....eekewyfFskrdkkyatgkrkn 75 
                              l pG rF P ++el+++yL++kv+gk+++ +e+ i+e+d+y   ePw+  k     +  a    ++k++yfF++ +k +a+g+r  
  mrna27240.1-v1.0-hybrid  10 LLPGQRFCPMEDELLMHYLNPKVNGKEVPGQETlISELDLYGDeEPWNTWKrfekdR--AndlrRNKDLYFFTRLKKVSAKGSRIC 93 
                              579************************9988877******97659***975344442..1345456689***************** PP

                      NAM  76 ratksgyWkatgkdkevlskkgel......vglkktLvfykgrapkgektdWvmheyrl 128
                              r++ +g+Wk + k k+++  ++++       g +kt ++ +  + + ++ +W+m ey+l
  mrna27240.1-v1.0-hybrid  94 RKVGKGTWKGQDKAKKIYLVDQKQqqtktlLGSRKTYTYKN--TGSEHHGRWIMYEYEL 150
                              ******************98444434555689999988874..3333589*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.22E-257173IPR003441NAC domain
PROSITE profilePS5100528.76110174IPR003441NAC domain
PfamPF023651.4E-1612150IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MEGGCERHTL LPGQRFCPME DELLMHYLNP KVNGKEVPGQ ETLISELDLY GDEEPWNTWK  60
RFEKDRANDL RRNKDLYFFT RLKKVSAKGS RICRKVGKGT WKGQDKAKKI YLVDQKQQQT  120
KTLLGSRKTY TYKNTGSEHH GRWIMYEYEL DESQFLHKKQ VNKNEYVLCL IRKNDILPEK  180
KRKRQEEEDD QVLEDYAEDD DDGDNMKPEP VIEEPQEKRQ RDLPCTDNVP APSLDPVAEV  240
DQWFNSEYYQ PAPPLEAYNL AEPQPSEGYL GKQCQMTMYS DNNIMTGHNN FHQDKNQVQQ  300
RGAEEGFMTP GEVGLYGEDL NYVMDDANWP SYDIEELKQL LHNDQQQLSA MDVGDQSNDN  360
SYLDFNNLTI *
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna27240.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011460782.10.0PREDICTED: NAC domain-containing protein 78-like
TrEMBLA0A2P6QGR31e-119A0A2P6QGR3_ROSCH; Putative transcription factor NAM family
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10480.12e-18NAC domain containing protein 50