PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

mrna27215.1-v1.0-hybrid

Organism

Fragaria vesca

Taxonomic ID

57918

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

MYB_related

Protein Properties

Length: 503aa MW: 57637.1 Da PI: 8.6071

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
mrna27215.1-v1.0-hybrid	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	34	6.7e-11	38	82	2	48
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 WT Ede+l+++ k++ + W+tIa+ ++ gRt+ qc++r+ k+l mrna27215.1-v1.0-hybrid 38 VEWTRGEDEKLLHLAKLMLSQ-WRTIAENVN-GRTASQCIERYEKLL 82 68***************99.*****.*********9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	7.896	1	31	IPR017930	Myb domain
SMART	SM00717	32	1	33	IPR001005	SANT/Myb domain
CDD	cd00167	2.00E-4	2	31	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.4E-10	2	38	IPR009057	Homeodomain-like
SuperFamily	SSF46689	4.79E-19	11	85	IPR009057	Homeodomain-like
PROSITE profile	PS51294	17.222	32	86	IPR017930	Myb domain
CDD	cd11659	2.53E-22	33	85	No hit	No description
SMART	SM00717	7.2E-12	36	84	IPR001005	SANT/Myb domain
Pfam	PF00249	1.5E-9	37	82	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.9E-14	39	83	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 503 aa Download sequence Send to blast
MKYGINEWDR ISMLLNRKSA QQCKARWFEL LEPSIKKVEW TRGEDEKLLH LAKLMLSQWR 60 TIAENVNGRT ASQCIERYEK LLNAACIDSH DKHEDPRRLR PGEIDPNTET RLARPDLVDM 120 DEDEKEMLLK ARARLANTKG KKSKRKAREA QLSKRLGGLL LYISREVVQE QHDQFPMIIE 180 ELEGKRRVHV EAELRKQDVA KNKISNKLNI DDVSNVETVR KISKLMLPAP QISDIELEKI 240 VKMSYAGDLV GSENGFAAAN LWVTHATPRF GSTPSKVTVS GDELHINEDI DKDDGDKFKQ 300 LKHSQKSRIN NLHKGLSNLP KLKNEDKRGA IAALRSTIEQ ADEMIRKEVL TAKYPINEKV 360 VTTFIEHELK EADSMIAEEA QYPGEAHKSF GSGCCLSSIA EDKNPVACLQ SEYEKVQYEL 420 ENVKKKAQII ENKVKVRIDG YERRAKDVLW PKIEKKFKQM DTATKELECF QALQKLEKSA 480 ATSPINIMWE EVQKQKELER TL*

Sequence ? help Back to Top

Protein Sequence Length: 503 aa Download sequence Send to blast

MKYGINEWDR ISMLLNRKSA QQCKARWFEL LEPSIKKVEW TRGEDEKLLH LAKLMLSQWR  60
TIAENVNGRT ASQCIERYEK LLNAACIDSH DKHEDPRRLR PGEIDPNTET RLARPDLVDM  120
DEDEKEMLLK ARARLANTKG KKSKRKAREA QLSKRLGGLL LYISREVVQE QHDQFPMIIE  180
ELEGKRRVHV EAELRKQDVA KNKISNKLNI DDVSNVETVR KISKLMLPAP QISDIELEKI  240
VKMSYAGDLV GSENGFAAAN LWVTHATPRF GSTPSKVTVS GDELHINEDI DKDDGDKFKQ  300
LKHSQKSRIN NLHKGLSNLP KLKNEDKRGA IAALRSTIEQ ADEMIRKEVL TAKYPINEKV  360
VTTFIEHELK EADSMIAEEA QYPGEAHKSF GSGCCLSSIA EDKNPVACLQ SEYEKVQYEL  420
ENVKKKAQII ENKVKVRIDG YERRAKDVLW PKIEKKFKQM DTATKELECF QALQKLEKSA  480
ATSPINIMWE EVQKQKELER TL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5mqf_L	4e-59	1	250	24	320	Cell division cycle 5-like protein
5xjc_L	4e-59	1	250	24	320	Cell division cycle 5-like protein
5yzg_L	4e-59	1	250	24	320	Cell division cycle 5-like protein
5z56_L	4e-59	1	250	24	320	Cell division cycle 5-like protein
5z57_L	4e-59	1	250	24	320	Cell division cycle 5-like protein
5z58_L	4e-59	1	250	24	320	Cell division cycle 5-like protein
6ff4_L	4e-59	1	250	24	320	Cell division cycle 5-like protein
6ff7_L	4e-59	1	250	24	320	Cell division cycle 5-like protein
6icz_L	4e-59	1	250	24	320	Cell division cycle 5-like protein
6id0_L	4e-59	1	250	24	320	Cell division cycle 5-like protein
6id1_L	4e-59	1	250	24	320	Cell division cycle 5-like protein
6qdv_O	4e-59	1	250	24	320	Cell division cycle 5-like protein
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Component of the MAC complex that probably regulates defense responses through transcriptional control and thereby is essential for plant innate immunity. Possesses a sequence specific DNA sequence 'CTCAGCG' binding activity. Involved in mRNA splicing and cell cycle control. May also play a role in the response to DNA damage. {ECO:0000250\|UniProtKB:Q99459, ECO:0000269\|PubMed:17298883, ECO:0000269\|PubMed:17575050, ECO:0000269\|PubMed:8917598}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	mrna27215.1-v1.0-hybrid

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024200253.1	0.0	cell division cycle 5-like protein
Swissprot	P92948	3e-89	CDC5L_ARATH; Cell division cycle 5-like protein
TrEMBL	A0A2P6QAF5	0.0	A0A2P6QAF5_ROSCH; Putative transcription factor MYB-HB-like family
STRING	XP_008218318.1	3e-94	(Prunus mume)
STRING	XP_006398166.1	5e-95	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4072	33	54

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09770.1	1e-91	cell division cycle 5

Link Out ? help Back to Top
Phytozome	mrna27215.1-v1.0-hybrid

Publications ? help Back to Top
Heyndrickx KS,Vandepoele K Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol., 2012. 159(3): p. 884-901 [PMID:22589469] Li S, et al. MAC3A and MAC3B, Two Core Subunits of the MOS4-Associated Complex, Positively Influence miRNA Biogenesis. Plant Cell, 2018. 30(2): p. 481-494 [PMID:29437988]