PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna27205.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family HB-other
Protein Properties Length: 371aa    MW: 40870.1 Da    PI: 8.4976
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna27205.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.11.3e-071374655
                             S--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC..........TS-HHHHHHHHHHHHHHH CS
                 Homeobox  6 tftkeqleeLeelFek..nrypsaeereeLAkkl..........gLterqVkvWFqNrRake 55
                             +f++ ++ e+e+  ++  n  p++e   +LA+k           +++ +qV +WFqNrR+  
  mrna27205.1-v1.0-hybrid 13 RFNQAEVAEMEAILHQhnNTMPTRELLMDLAQKFsetaerkgkfQVQMKQVWNWFQNRRYAI 74
                             689999999999998656999**************************************865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.81E-11476IPR009057Homeodomain-like
SMARTSM003895.3E-4781IPR001356Homeobox domain
CDDcd000861.62E-51375No hitNo description
PfamPF000463.4E-51374IPR001356Homeobox domain
PROSITE profilePS5007110.3331377IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.607.4E-91379IPR009057Homeodomain-like
PfamPF167197.9E-40130256IPR032001SAWADEE domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0003682Molecular Functionchromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MGRPPSNGGP SFRFNQAEVA EMEAILHQHN NTMPTRELLM DLAQKFSETA ERKGKFQVQM  60
KQVWNWFQNR RYAIRAKSSK VLGKLNVSPM PRVESTPVRT IPQGPQPIAA SIHAPSVPSS  120
ARVPSENPIL EFEAKSGRDA AWYDVANFLS HRSLESGDPD VLVRFAGFGP EEDEWVNVRK  180
HVRQRSLPCE SSECVAVLPG DLILCFQEGK EQALYFDANV LDAQRRRHDV RGCRCRFLVR  240
YVHDQSEEIV PLRKVCRRPE TDYRLHQLHA ENNTTAAEQK STDHFKVPST SAEMIQKQHN  300
PVFHVNASVA PQSSTPELRK PEMSIAMSAG NTSGLPGSGG VASGSAPVLT SCTATVISHG  360
GSVGNMPGGN *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4iuq_A1e-441302604134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuq_B1e-441302604134SAWADEE HOMEODOMAIN HOMOLOG 1
4iur_A1e-441302604134SHH1 SAWADEE
4iur_B1e-441302604134SHH1 SAWADEE
4iut_A1e-441302604134SAWADEE HOMEODOMAIN HOMOLOG 1
4iut_B1e-441302604134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_A1e-441302604134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_B1e-441302604134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_A1e-441302604134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_B1e-441302604134SAWADEE HOMEODOMAIN HOMOLOG 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a role in the recruitment of Pol IV to genomic regions associated with K9 methylated histone H3 that are targets for RdDM.
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna27205.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004294099.10.0PREDICTED: protein SAWADEE HOMEODOMAIN HOMOLOG 2
SwissprotQ8RWJ71e-140SHH2_ARATH; Protein SAWADEE HOMEODOMAIN HOMOLOG 2
TrEMBLA0A2P6QAC80.0A0A2P6QAC8_ROSCH; Putative transcription factor Homobox-WOX family
STRINGXP_004294099.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68163139
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18380.11e-124sequence-specific DNA binding transcription factors;sequence-specific DNA binding