PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna27194.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | bZIP | ||||||||
Protein Properties | Length: 849aa MW: 93710.6 Da PI: 6.5733 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 33.7 | 7.7e-11 | 707 | 752 | 5 | 50 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkele 50 kr +r NR +A+rsR RK+++i eLe+ v +L++e +aL ++ mrna27194.1-v1.0-hybrid 707 KRVKRILANRQSAQRSRVRKLQYISELERSVTSLQSEVSALSPRVA 752 899**********************************999987665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF51182 | 5.87E-161 | 21 | 453 | IPR011051 | RmlC-like cupin domain |
TIGRFAMs | TIGR01015 | 2.1E-193 | 22 | 451 | IPR005708 | Homogentisate 1,2-dioxygenase |
Pfam | PF04209 | 8.8E-212 | 24 | 451 | IPR005708 | Homogentisate 1,2-dioxygenase |
Gene3D | G3DSA:2.60.120.10 | 5.7E-7 | 215 | 240 | IPR014710 | RmlC-like jelly roll fold |
Gene3D | G3DSA:2.60.120.10 | 2.1E-59 | 265 | 421 | IPR014710 | RmlC-like jelly roll fold |
SMART | SM00338 | 8.8E-15 | 703 | 767 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 9.795 | 705 | 757 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 4.4E-9 | 707 | 752 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 5.63E-11 | 707 | 761 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 2.8E-11 | 707 | 758 | No hit | No description |
CDD | cd14703 | 3.56E-25 | 708 | 758 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 710 | 725 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0006559 | Biological Process | L-phenylalanine catabolic process | ||||
GO:0006572 | Biological Process | tyrosine catabolic process | ||||
GO:0055114 | Biological Process | oxidation-reduction process | ||||
GO:1902000 | Biological Process | homogentisate catabolic process | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0004411 | Molecular Function | homogentisate 1,2-dioxygenase activity | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 849 aa Download sequence Send to blast |
MDQPPITAKT SGSDSLSSAV DLPYQSGFHN HFSSEALPGA LPSGQSSPLL CPYGLYAEQI 60 SGTSFTSPRK LNLRSWLYRI KPSVTHEPFK PLRPSHGRLV SEFNDSNSFT TPTQLRWKPV 120 DVPETPTDFV QGLYTVCGAG SSFLRHGFAI HMYTANKSMD DRAFCNADGD FLIVPQLGRL 180 WITTECGKLN VSPGEVAVLP QGFRFAVDLP DGPSRGYVAE VFGTHFQLPE LGPIGANGLA 240 APRDFLVPTA WFEESTRPGY IIIQKYGGEL FTAKQDFSPF NVVAWHGNYA PYKYDLTKFC 300 PFNTVLFDHG DPSVNTVLTA PTDKPGVALL DFAIFPPRWL VAEHTFRPPY YHRNCMSEFM 360 GLIYGGYEAK ADGFLPGGAS LHSCMTPHGP DTKTYEATIA RGNDVGPHKI SDTMAFMFES 420 CLVPRICSWA LESPLIDHDY YQCWIGLRSH FTGTKADAKD GNIQNDFPAS PSSSSSLHPH 480 LPPQLLLAVS SSPSPHHDSE LGALPPPQNN ALHGQLSPLL HRRPQPPPSS PPPPQQQSSS 540 CWMDEFLDFS SARRGAHRRS ASDSIAFLES PLNVLDDVDH RNPTVHGANN IAGSFDRLDD 600 EQLMSMFSDD IAVPPTVTSS SNPSSPSDQN SNNDEIMNTN NSNGNNDENF NNINGHSVNH 660 RPLMQLRIDG HQQPKSEPGE VDSSCDPNDP HSQSPRAPPP TSPADPKRVK RILANRQSAQ 720 RSRVRKLQYI SELERSVTSL QSEVSALSPR VAFLDHQRLI LNVDNSALKQ RIAALAQDKL 780 FKDAHQEALK KEIERLRQVY HHQTLKKMEN NSNNNNQNTA AAPPQHHHNA ADIMLCTDHN 840 KEQQQILN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ey2_A | 1e-172 | 16 | 452 | 24 | 461 | HOMOGENTISATE 1,2-DIOXYGENASE |
1eyb_A | 1e-172 | 16 | 452 | 24 | 461 | HOMOGENTISATE 1,2-DIOXYGENASE |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna27194.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011460752.1 | 0.0 | PREDICTED: homogentisate 1,2-dioxygenase | ||||
Swissprot | Q9ZRA2 | 0.0 | HGD_ARATH; Homogentisate 1,2-dioxygenase | ||||
TrEMBL | A0A2P6QAB8 | 0.0 | A0A2P6QAB8_ROSCH; Putative homogentisate 1,2-dioxygenase | ||||
STRING | EMJ15072 | 0.0 | (Prunus persica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G58120.1 | 2e-56 | bZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | mrna27194.1-v1.0-hybrid |
Publications ? help Back to Top | |||
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