PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna27194.1-v1.0-hybrid
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family bZIP
Protein Properties Length: 849aa    MW: 93710.6 Da    PI: 6.5733
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna27194.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_133.77.7e-11707752550
                              CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                   bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkele 50 
                              kr +r   NR +A+rsR RK+++i eLe+ v +L++e +aL  ++ 
  mrna27194.1-v1.0-hybrid 707 KRVKRILANRQSAQRSRVRKLQYISELERSVTSLQSEVSALSPRVA 752
                              899**********************************999987665 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF511825.87E-16121453IPR011051RmlC-like cupin domain
TIGRFAMsTIGR010152.1E-19322451IPR005708Homogentisate 1,2-dioxygenase
PfamPF042098.8E-21224451IPR005708Homogentisate 1,2-dioxygenase
Gene3DG3DSA:2.60.120.105.7E-7215240IPR014710RmlC-like jelly roll fold
Gene3DG3DSA:2.60.120.102.1E-59265421IPR014710RmlC-like jelly roll fold
SMARTSM003388.8E-15703767IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.795705757IPR004827Basic-leucine zipper domain
PfamPF001704.4E-9707752IPR004827Basic-leucine zipper domain
SuperFamilySSF579595.63E-11707761No hitNo description
Gene3DG3DSA:1.20.5.1702.8E-11707758No hitNo description
CDDcd147033.56E-25708758No hitNo description
PROSITE patternPS000360710725IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006559Biological ProcessL-phenylalanine catabolic process
GO:0006572Biological Processtyrosine catabolic process
GO:0055114Biological Processoxidation-reduction process
GO:1902000Biological Processhomogentisate catabolic process
GO:0005829Cellular Componentcytosol
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0004411Molecular Functionhomogentisate 1,2-dioxygenase activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 849 aa     Download sequence    Send to blast
MDQPPITAKT SGSDSLSSAV DLPYQSGFHN HFSSEALPGA LPSGQSSPLL CPYGLYAEQI  60
SGTSFTSPRK LNLRSWLYRI KPSVTHEPFK PLRPSHGRLV SEFNDSNSFT TPTQLRWKPV  120
DVPETPTDFV QGLYTVCGAG SSFLRHGFAI HMYTANKSMD DRAFCNADGD FLIVPQLGRL  180
WITTECGKLN VSPGEVAVLP QGFRFAVDLP DGPSRGYVAE VFGTHFQLPE LGPIGANGLA  240
APRDFLVPTA WFEESTRPGY IIIQKYGGEL FTAKQDFSPF NVVAWHGNYA PYKYDLTKFC  300
PFNTVLFDHG DPSVNTVLTA PTDKPGVALL DFAIFPPRWL VAEHTFRPPY YHRNCMSEFM  360
GLIYGGYEAK ADGFLPGGAS LHSCMTPHGP DTKTYEATIA RGNDVGPHKI SDTMAFMFES  420
CLVPRICSWA LESPLIDHDY YQCWIGLRSH FTGTKADAKD GNIQNDFPAS PSSSSSLHPH  480
LPPQLLLAVS SSPSPHHDSE LGALPPPQNN ALHGQLSPLL HRRPQPPPSS PPPPQQQSSS  540
CWMDEFLDFS SARRGAHRRS ASDSIAFLES PLNVLDDVDH RNPTVHGANN IAGSFDRLDD  600
EQLMSMFSDD IAVPPTVTSS SNPSSPSDQN SNNDEIMNTN NSNGNNDENF NNINGHSVNH  660
RPLMQLRIDG HQQPKSEPGE VDSSCDPNDP HSQSPRAPPP TSPADPKRVK RILANRQSAQ  720
RSRVRKLQYI SELERSVTSL QSEVSALSPR VAFLDHQRLI LNVDNSALKQ RIAALAQDKL  780
FKDAHQEALK KEIERLRQVY HHQTLKKMEN NSNNNNQNTA AAPPQHHHNA ADIMLCTDHN  840
KEQQQILN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ey2_A1e-1721645224461HOMOGENTISATE 1,2-DIOXYGENASE
1eyb_A1e-1721645224461HOMOGENTISATE 1,2-DIOXYGENASE
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna27194.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011460752.10.0PREDICTED: homogentisate 1,2-dioxygenase
SwissprotQ9ZRA20.0HGD_ARATH; Homogentisate 1,2-dioxygenase
TrEMBLA0A2P6QAB80.0A0A2P6QAB8_ROSCH; Putative homogentisate 1,2-dioxygenase
STRINGEMJ150720.0(Prunus persica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58120.12e-56bZIP family protein
Publications ? help Back to Top
  1. Dixon DP,Edwards R
    Enzymes of tyrosine catabolism in Arabidopsis thaliana.
    Plant Sci., 2006. 171(3): p. 360-6
    [PMID:22980205]
  2. Han C, et al.
    Disruption of fumarylacetoacetate hydrolase causes spontaneous cell death under short-day conditions in Arabidopsis.
    Plant Physiol., 2013. 162(4): p. 1956-64
    [PMID:23743712]
  3. Pedrotti L, et al.
    Snf1-RELATED KINASE1-Controlled C/S1-bZIP Signaling Activates Alternative Mitochondrial Metabolic Pathways to Ensure Plant Survival in Extended Darkness.
    Plant Cell, 2018. 30(2): p. 495-509
    [PMID:29348240]
  4. Newman T, et al.
    Genes galore: a summary of methods for accessing results from large-scale partial sequencing of anonymous Arabidopsis cDNA clones.
    Plant Physiol., 1994. 106(4): p. 1241-55
    [PMID:7846151]