PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna27184.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family NAC
Protein Properties Length: 415aa    MW: 47015.2 Da    PI: 4.0359
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna27184.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM70.25.3e-2271453128
                      NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykv.ePwdLpk.....kvka....eekewyfFskrdkkyatgkrknr. 76 
                              pG rF P ++el+++yL++kv+g +++ +e  i evd+y   +Pw++ k     k  a     +k++yfF++++kk+a+++r +r 
  mrna27184.1-v1.0-hybrid   7 PGQRFCPMEDELLMFYLQPKVNGLEVPGNEDlIGEVDLYGDeDPWKIWKrfeatK--AndlrMNKDLYFFTQKKKKTARSSRVSRt 90 
                              8************************8776555*******7658****75344431..2334345588******************4 PP

                      NAM  77 atksgyWkatgkdkevlsk..kgel.....vglkktLvfykgrapkgektdWvmheyrl 128
                              + + g+Wk + + +  l+   +  +      g kkt ++   ++ + ++ +W+m ey+l
  mrna27184.1-v1.0-hybrid  91 VGSGGTWKGQNRAEVYLVDenQ--KptstlLGFKKTYTYK--NEGSVHHGRWIMYEYEL 145
                              455889**99886655554340..2455559999999998..45555689*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.14E-245167IPR003441NAC domain
PROSITE profilePS5100528.2035168IPR003441NAC domain
PfamPF023653.1E-167145IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 415 aa     Download sequence    Send to blast
MESGDLPGQR FCPMEDELLM FYLQPKVNGL EVPGNEDLIG EVDLYGDEDP WKIWKRFEAT  60
KANDLRMNKD LYFFTQKKKK TARSSRVSRT VGSGGTWKGQ NRAEVYLVDE NQKPTSTLLG  120
FKKTYTYKNE GSVHHGRWIM YEYELDESQI LHEKVNKNEY VLCLLRKNDV LPEKKRKRQE  180
EDEMVEDYVV DDDGDNNNSE LMMMQQEKRQ RRLPPSVQDE QEQFLVSDEL FLQPAEPSSE  240
YGQVAGAVPT PLEGEPLSLD ENMGLLTPPM LEEAELQQLF NGEFLQGGQI PLEEEPVDAM  300
QVFENCGQQQ LEAEPQGPQP REENLGQQCQ VPTFSANEIV GDVGFDQAEN MVRQMGAEAL  360
GEVDLYGGNG GDAIVGESWS MSFMESLMND ELPTTVEVGD SNAAYSDFGY NLEF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna27184.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011462053.10.0PREDICTED: uncharacterized protein LOC105350807
TrEMBLA0A2P6QGR31e-121A0A2P6QGR3_ROSCH; Putative transcription factor NAM family
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF55724133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65910.13e-12NAC domain containing protein 28