PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna27171.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | TCP | ||||||||
Protein Properties | Length: 544aa MW: 58452.9 Da PI: 9.736 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 116.7 | 3e-36 | 158 | 261 | 1 | 89 |
TCP 1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...............ssssas 71 a+g+kdrhsk++T++g+RdRRvRl a++a++f+d+qd+LG+d++sk+++WL+++ak+ai+el ++ + mrna27171.1-v1.0-hybrid 158 ATGRKDRHSKVCTAKGPRDRRVRLAAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKAAIDELDELppwnpnsisvqtsasP----- 238 589**************************************************************7666555554322110..... PP TCP 72 ec.eaesssssasnsssg.....k 89 + + s ++++n+ss + mrna27171.1-v1.0-hybrid 239 -TaPPTSAAQETQNNSSLhfsmvE 261 .11111111111111111122220 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 9.0E-30 | 159 | 288 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 33.273 | 161 | 219 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045962 | Biological Process | positive regulation of development, heterochronic | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 544 aa Download sequence Send to blast |
MAEPFAIRFQ KSHSTSSSRS SPSVKALGKS KAGSVEIHKP SKQKSSIVVA KNNSDRSSTS 60 SASASSSSGA AVTTVPLKAG KGNSQYPHSS TSTGEPTIEY AARKMGEQSH NNLHHHHHRA 120 TASSSSAAAR LGLGIRTTTS SSTASEIVEA RGGHIIRATG RKDRHSKVCT AKGPRDRRVR 180 LAAHTAIQFY DVQDRLGYDR PSKAVDWLIK KAKAAIDELD ELPPWNPNSI SVQTSASPTA 240 PPTSAAQETQ NNSSLHFSMV EAPSSLSANR RASMVGSGVA ELVNQNSSNF LPPSMDSDSI 300 ADTIKSFFPM GAATTAETPS FHPSYPPDLL SRTSSQSQDL RLSLHSFQDP ILLHHHQAHQ 360 HQTHHQNEQT FLTPNPLGFD SSAATWTEQH HQQQQQAELN RFQRMLAWSN AGGGDSNNNN 420 NNNSGGGGGG FTFNSLPLSQ SQSPTLQPFL FGQNQFFSSQ RGPLQSSNAP SVHAWIDHND 480 LSDHQHQMAP SMHNHHHQQS SISGMGFASG VFPGFHIPAR IQGEEEHDGI SDKPSSASSN 540 SRH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 4e-20 | 166 | 219 | 1 | 54 | Putative transcription factor PCF6 |
5zkt_B | 4e-20 | 166 | 219 | 1 | 54 | Putative transcription factor PCF6 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor playing a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164) (PubMed:12931144, PubMed:17307931). Required during early steps of embryogenesis (PubMed:15634699). Participates in ovule develpment (PubMed:25378179). Activates LOX2 expression by binding to the 5'-GGACCA-3' motif found in its promoter (PubMed:18816164). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:15634699, ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:18816164, ECO:0000269|PubMed:25378179}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00009 | PBM | Transfer from 929286 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna27171.1-v1.0-hybrid |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by the miRNA miR-JAW/miR319 (PubMed:12931144, PubMed:18816164). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:18816164}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM468863 | 2e-67 | AM468863.2 Vitis vinifera contig VV78X023076.3, whole genome shotgun sequence. | |||
GenBank | FQ381831 | 2e-67 | FQ381831.1 Vitis vinifera clone SS0ABG82YF20. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004294116.1 | 0.0 | PREDICTED: transcription factor TCP4 | ||||
Swissprot | Q8LPR5 | 1e-104 | TCP4_ARATH; Transcription factor TCP4 | ||||
TrEMBL | A0A2P6QA82 | 0.0 | A0A2P6QA82_ROSCH; Putative transcription factor TCP family | ||||
STRING | XP_004294116.1 | 0.0 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1163 | 34 | 105 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G15030.3 | 1e-100 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | mrna27171.1-v1.0-hybrid |