PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna27169.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | NZZ/SPL | ||||||||
Protein Properties | Length: 445aa MW: 48212.7 Da PI: 7.9972 | ||||||||
Description | NZZ/SPL family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NOZZLE | 21.4 | 4e-07 | 12 | 67 | 38 | 94 |
NOZZLE 38 etkksrgrkpgsktaqqkqkkptlrgmgvaklerfiieeekkklvvatvgdtssvaa 94 + gr sk ++ kqkk rg+gva+le+ ++ee++kk + t + a+ mrna27169.1-v1.0-hybrid 12 SPTGGFGRSSNSKKTN-KQKKVPQRGLGVAQLEKIRLEEQQKKAASVLTSPTPTPAS 67 5566679999999875.6677778*****************9986665555554443 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF08744 | 8.2E-5 | 16 | 60 | IPR014855 | Plant transcription factor NOZZLE |
Sequence ? help Back to Top |
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Protein Sequence Length: 445 aa Download sequence Send to blast |
MGVEEKTQQC TSPTGGFGRS SNSKKTNKQK KVPQRGLGVA QLEKIRLEEQ QKKAASVLTS 60 PTPTPASNSL PSPTKSSPCV PNPAPIRHYQ PPSSISFPSL PSLDLPSPNS IFRPPNAEVV 120 RKQQNSVSAV PLPNNGFEIP GHGNVVVPNF WNPNCEYNGA DLNKESSSGI LDPGFAFRPS 180 LNNLPTFDHS NPIWPLPNFQ RTQQFHHQPQ PQPPPPPPPS LVNVSSATSL SSSSSVLNFH 240 TEPPSNQSYY SNYTTPMWSE EERMVGMKRP YPFSQEIDAP SINFKFPTFV APPMRTDETT 300 SCGNRGGTYN LDPGCNSIFR EGPTCSTSIA ESNSKISIKE NGSVNGDFLT LAPPTSNRAC 360 PSQKFSFPPG YLAFHNPEVP NFASFPYQGS SEDTIFQPGP SGSNPQQAFY TFIPPARAQL 420 VRPAATINNC NGDVGETVDL NLKL* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna27169.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011460771.1 | 0.0 | PREDICTED: myb-like protein J | ||||
TrEMBL | A0A2P6QA73 | 0.0 | A0A2P6QA73_ROSCH; Putative transcription factor NOZZLE family | ||||
STRING | EMJ12826 | 1e-149 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8956 | 12 | 13 |
Link Out ? help Back to Top | |
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Phytozome | mrna27169.1-v1.0-hybrid |