PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna27021.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family ERF
Protein Properties Length: 310aa    MW: 33447.7 Da    PI: 6.5316
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna27021.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.57.8e-19130180155
                      AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                              s y+GVr +k +g+Wv+eIr+p   gk++r++lg+f t+e+Aa+a++ a++ ++g
  mrna27021.1-v1.0-hybrid 130 SVYRGVRKRK-WGKWVSEIREP---GKKTRIWLGSFETPEMAAAAYDVAALHFRG 180
                              78*****999.**********8...557***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541719.81E-23130189IPR016177DNA-binding domain
PfamPF008473.3E-12130180IPR001471AP2/ERF domain
CDDcd000181.75E-23130190No hitNo description
Gene3DG3DSA:3.30.730.103.1E-32131189IPR001471AP2/ERF domain
SMARTSM003801.1E-37131194IPR001471AP2/ERF domain
PROSITE profilePS5103223.894131188IPR001471AP2/ERF domain
PRINTSPR003678.3E-10132143IPR001471AP2/ERF domain
PRINTSPR003678.3E-10154170IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MSLLSPPYGT GAPSPAPYGG ERREIRTIFV HSPPYVAGEG APPPQPTPAA SPTTLISIPV  60
LGDLAGKLQF GGLVRDGKWS GKLLESAGVE VRPRVTPYGG ERTKIRTLDN SVYMGEPNSG  120
SSIVCGAATS VYRGVRKRKW GKWVSEIREP GKKTRIWLGS FETPEMAAAA YDVAALHFRG  180
REARLNFPEL VSYLPRPASS SPDDIRMAAH EAAIRLRSNN GDTNNSLVAA GHCEVGSSSS  240
NAVAPVTVRL SPIQIQAINE SPLDSPKMWM QMSEALMSEE SMMFSNDFDD EGMNSNQWGN  300
MQQDSLWDP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A8e-16132192667ATERF1
3gcc_A8e-16132192667ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00227DAPTransfer from AT1G71450Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna27021.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011464784.11e-143PREDICTED: ethylene-responsive transcription factor ERF021
SwissprotQ9C9I24e-63ERF21_ARATH; Ethylene-responsive transcription factor ERF021
TrEMBLA0A3Q8TD591e-138A0A3Q8TD59_FRAAN; Transcription factor ERF13
STRINGXP_004299858.11e-121(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17773191
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71450.12e-63ERF family protein