PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna27017.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family ERF
Protein Properties Length: 262aa    MW: 28518.8 Da    PI: 4.7447
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna27017.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2574.9e-181160255
                      AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                             +y+GVr +k +g+Wv+eIr+p++   + r++lg++  +e+Aa+a++aa++ l+g
  mrna27017.1-v1.0-hybrid 11 KYRGVRKRK-WGKWVSEIREPRK---KSRIWLGSYEAPEMAAAAYDAAALHLKG 60
                             8*****999.**********843...6***********************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000189.46E-201069No hitNo description
PfamPF008471.2E-111160IPR001471AP2/ERF domain
PROSITE profilePS5103222.8531168IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.0E-291169IPR001471AP2/ERF domain
SMARTSM003805.1E-331174IPR001471AP2/ERF domain
SuperFamilySSF541711.44E-201169IPR016177DNA-binding domain
PRINTSPR003672.0E-111223IPR001471AP2/ERF domain
PRINTSPR003672.0E-115070IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MEEVHDEPAA KYRGVRKRKW GKWVSEIREP RKKSRIWLGS YEAPEMAAAA YDAAALHLKG  60
PGVVLNFPEM VDSLPRPASS NPTDVQLAAQ EAANAIRFRS QPMNSVSTEV AGGSSGGAAP  120
VTVGLSPSQI QAINESPLDS PMMWMQDMYM SYSDEALVFG EDMSSSMGFY DDHEDECLGA  180
RMRLLLHNYD GVDRDLTADV VDAFSSSIAN SIDVEEEAER GNHRLPDSHS STRIYSRGSL  240
MALEASKPHR MNHDGGGAAL L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-151273668ATERF1
3gcc_A1e-151273668ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna27017.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004301452.11e-126PREDICTED: ethylene-responsive transcription factor ERF022
SwissprotQ9C9I21e-43ERF21_ARATH; Ethylene-responsive transcription factor ERF021
TrEMBLA0A3S8T8Z51e-125A0A3S8T8Z5_FRAAN; Transcription factor ERF12
STRINGXP_004301452.11e-126(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17773191
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G33760.14e-40ERF family protein