PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna27007.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family C3H
Protein Properties Length: 698aa    MW: 76053.1 Da    PI: 6.5857
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna27007.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.63.9e-07280300526
                              --SGGGGTS--TTTTT-SS-SS CS
                  zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                              +C+ f++ G C++Gd C +aHg
  mrna27007.1-v1.0-hybrid 280 PCPEFRK-GACRRGDMCEYAHG 300
                              8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.25.40.202.8E-198159IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484032.18E-1820159IPR020683Ankyrin repeat-containing domain
PfamPF127964.7E-1052123IPR020683Ankyrin repeat-containing domain
SMARTSM002480.0165787IPR002110Ankyrin repeat
PROSITE profilePS5029717.50257158IPR020683Ankyrin repeat-containing domain
CDDcd002047.90E-1559135No hitNo description
PROSITE profilePS5008811.56892127IPR002110Ankyrin repeat
SMARTSM002482.4E-492124IPR002110Ankyrin repeat
SMARTSM003569.5E-6275301IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-4280300IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.981280302IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.5E-4308338IPR000571Zinc finger, CCCH-type
SMARTSM0035637310333IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 698 aa     Download sequence    Send to blast
MNHLTVATED SFSRALEFAS DNDVQGFKQL IDHDTSSINQ IGLWYSRQKG SKHIVSEQRT  60
PLMVAATYGS VDVVKLIVSN PEADVNFSCG LDQSTALHCA ASGGSVNALD IVKLLLSAGA  120
DPSCLDASGH RPIDVIVVHP KLQSMRSVLE ELLSKKASDC SVSDCSLHLS IITSNSDSLA  180
LSSSSENGLQ SPSESVSSPA SKFTELLVNS NQEKKEYPYD PSLPDIKNSI YATDEFRMFS  240
FKVRPCSRAY SHDWTECPFV HPGENARRRD PRKFHYSCVP CPEFRKGACR RGDMCEYAHG  300
VFECWLHPAQ YRTRLCKDGT SCNRRVCFFA HTTEELRPLY VSTGSAVPSP RSSASGPTVM  360
DMAAALSLLP GSPSSVSAMS PSPFSQSMSP SGNGISQSSV AWPHPNVPTL HLPGSNLQSS  420
RLRSSLSARD MPPENLNLLR ELDAQQQLLN ELNCFSQPRP SPISVGRSGR SKTLTPSNLE  480
ELFSAEFSSS PRYSDHTAAS VFSPTHKSAL LNQFQQQSML SPINTNGMSP KTVDHPLLQA  540
QFGVQSPGRM SPRSVEPISP MGSRLSAFSQ LENSHQQLRS LSSRDLGSKN FSSMVGSPVN  600
SWSNGKLDWS VNGEAEGRLR RSSSFELRNN GEEPDLSWVQ SLVKESPPEM MKDKFAAPAS  660
SAVASGEVLN SNSQIESIDH SVLDAWLEQM QIDQLVV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna27007.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011468826.10.0PREDICTED: zinc finger CCCH domain-containing protein 30-like
SwissprotP937550.0C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBLA0A2P6S7I50.0A0A2P6S7I5_ROSCH; Putative transcription factor C3H family
STRINGXP_004306535.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17323395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.10.0CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. He L, et al.
    Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene.
    Plant Physiol., 2016. 171(3): p. 1675-85
    [PMID:27208260]