PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna26990.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family C3H
Protein Properties Length: 396aa    MW: 44370.1 Da    PI: 6.7269
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna26990.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.57.5e-06326226
                             -S---SGGGGTS--TTTTT-SS-SS CS
                  zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                             k++lC+ffa  G C  G+ C F+H+
  mrna26990.1-v1.0-hybrid  3 KRVLCKFFAH-GACLKGEHCEFSHD 26
                             89****6666.*************5 PP
2zf-CCCH22.81.6e-073454526
                             --SGGGGTS--TTTTT-SS-SS CS
                  zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
                             +C f+++ G C +G+rC++ H+
  mrna26990.1-v1.0-hybrid 34 ICTFYQK-GACAFGSRCRYEHV 54
                             7******.***********997 PP
3zf-CCCH18.82.8e-06144166326
                              S---SGGGGTS--TTTTT-SS-SS CS
                  zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                              +++C+ fa+ G C++G++C+  Hg
  mrna26990.1-v1.0-hybrid 144 RAICS-FAAAGNCPRGEKCPHVHG 166
                              78999.*************98887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.399128IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-4227IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.49E-7426IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.7842956IPR000571Zinc finger, CCCH-type
SMARTSM003565.2E-43155IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.92E-53153IPR000571Zinc finger, CCCH-type
PfamPF006426.1E-53454IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.056141168IPR000571Zinc finger, CCCH-type
SMARTSM003566.3E-4142167IPR000571Zinc finger, CCCH-type
SuperFamilySSF578501.25E-13200274No hitNo description
Gene3DG3DSA:3.30.40.103.2E-10203269IPR013083Zinc finger, RING/FYVE/PHD-type
CDDcd001624.64E-4209269No hitNo description
PROSITE profilePS5008912.43210268IPR001841Zinc finger, RING-type
PfamPF000973.3E-7210267IPR018957Zinc finger, C3HC4 RING-type
SMARTSM001841.4E-7210267IPR001841Zinc finger, RING-type
PROSITE patternPS005180234243IPR017907Zinc finger, RING-type, conserved site
SMARTSM003560.054297325IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.347297326IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    Send to blast
MAKRVLCKFF AHGACLKGEH CEFSHDWKDP SNNICTFYQK GACAFGSRCR YEHVKASRAQ  60
SSGSSSSANS HQSLAFDSGL AHPSRTASSG VALVPGTLSE LSAFSNPFLP PPKPAWSDSL  120
DDGDFDHSED NDVGETRNAR PADRAICSFA AAGNCPRGEK CPHVHGDICP SCGKHCLHPY  180
RPVEREEHMR MCEEKHKQLE ALKRSQEIEC SVCLERVLSK PTVAERKFGI LSECDHPFCI  240
SCIRNWRSSS PTSGMDVNSA LRACPICRKL SYFVIPSVIW YNSKEEKEEI VDSYKARLRS  300
IDCKHFDFGN GNCPFGTSCF YKHTVKPGSY VWKFHRPPPR RCDIVRMDSL YEMFDRLEEL  360
EDYTPGDLDI PLEVQLLLMQ LGLCPSDSSD DELNY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna26990.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011468814.10.0PREDICTED: zinc finger CCCH domain-containing protein 69 isoform X1
SwissprotE0X9N41e-148C3H69_ARATH; Putative RING-type E3 ubiquitin transferase C3H69
TrEMBLA0A2P6S7G20.0A0A2P6S7G2_ROSCH; Putative transcription factor C3H family
STRINGXP_004306527.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF102113340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.21e-134C3H family protein
Publications ? help Back to Top
  1. Wang CT,Ho CH,Hseu MJ,Chen CM
    The subtelomeric region of the Arabidopsis thaliana chromosome IIIR contains potential genes and duplicated fragments from other chromosomes.
    Plant Mol. Biol., 2010. 74(1-2): p. 155-66
    [PMID:20652368]