PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna26895.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family bHLH
Protein Properties Length: 355aa    MW: 40009.1 Da    PI: 4.5782
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna26895.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.77.8e-12187230654
                              HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                      HLH   6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                               ++ErrRR+r+N++++ Lr+++Pk +      K++  +iL  +++Y+k+L
  mrna26895.1-v1.0-hybrid 187 LMAERRRRKRLNDRLSMLRSIVPKiS------KMDRTSILGDTIDYMKEL 230
                              589*********************66......****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.491181230IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.32E-15185246IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-9187230IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-11187236IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.23E-4188230No hitNo description
Gene3DG3DSA:4.10.280.101.9E-14188243IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048734.29E-4280321No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009005anatomyroot
PO:0007134developmental stagesporophyte vegetative stage
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MELNEHSFLE ELLALRRDSS WETIPPEMNE FLSSSTWSSF DYFDNQNLSP FFPNSSSSQE  60
FSPPFEPNLN NCHNNTTFNE VYYPLGFGTD ELLSAPQLTT DSSYTTLGDT PPFPVQEDNN  120
PWSMLEQEEL SILGDEMHNL ETQAAACKVE PTQSSSPEAA PVFNMGLCVE RNSRASKKLQ  180
GQPSKNLMAE RRRRKRLNDR LSMLRSIVPK ISKMDRTSIL GDTIDYMKEL LDRINNLQHG  240
IEEGGSDQLN VMRLIKDMKP NEMLVRNSPK FDVQRRNVDT RIEICCAGKP GLLLSTVTTL  300
EALGLEIKQC VISCFNDFAM QASCSEGLDQ RTLVTSEDMK QALFRNAGYG GRCL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1189196ERRRRKRL
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna26895.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004299826.10.0PREDICTED: transcription factor bHLH93-like
SwissprotQ9LSL11e-86BH093_ARATH; Transcription factor bHLH93
TrEMBLA0A2P6PG760.0A0A2P6PG76_ROSCH; Putative transcription factor bHLH family
STRINGXP_004299826.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF118634103
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65640.15e-89beta HLH protein 93
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Sharma N, et al.
    NO FLOWERING IN SHORT DAY (NFL) is a bHLH transcription factor that promotes flowering specifically under short-day conditions in Arabidopsis.
    Development, 2016. 143(4): p. 682-90
    [PMID:26758694]
  4. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]
  5. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]