PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna26880.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family bHLH
Protein Properties Length: 225aa    MW: 24295.2 Da    PI: 5.0192
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna26880.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.97.6e-13160205655
                              HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                              +++Er RR ri +++ +L+el+P+     +k  + a++L +AveY+k Lq
  mrna26880.1-v1.0-hybrid 160 SIAERVRRTRISDRIRKLQELVPNM----DKQTNTADMLDEAVEYVKFLQ 205
                              689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.932154204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.62E-17157221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.45E-14158209No hitNo description
Gene3DG3DSA:4.10.280.108.2E-17159215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.9E-13160210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.5E-10160205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042335Biological Processcuticle development
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009005anatomyroot
PO:0007134developmental stagesporophyte vegetative stage
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MQPAPGGSGE VTRGGLGRFC SAPASWLEAL LEDEEEDPLK PTQCLTDLLA DSCGGPTSSV  60
AVGFGAEVVA DPAARFLRQN SSPADFVGNS SDGSEGYFSG FGGIPASQLD YVSNPNFGSV  120
SSSSLANKRV REVKMEEGGL EESGALRVRA KRGCATHPRS IAERVRRTRI SDRIRKLQEL  180
VPNMDKQTNT ADMLDEAVEY VKFLQKQIQE LSEYQRRCKC MPKE*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00181DAPTransfer from AT1G35460Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna26880.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011464756.11e-164PREDICTED: transcription factor bHLH80-like
RefseqXP_011464757.11e-164PREDICTED: transcription factor bHLH80-like
RefseqXP_011464759.11e-164PREDICTED: transcription factor bHLH80-like
RefseqXP_011464760.11e-164PREDICTED: transcription factor bHLH80-like
SwissprotQ9C8P81e-65BH080_ARATH; Transcription factor bHLH80
TrEMBLA0A2P6PES01e-121A0A2P6PES0_ROSCH; Putative transcription factor bHLH family
STRINGXP_004301430.11e-164(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF91323043
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G35460.13e-56bHLH family protein