PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna26847.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family RAV
Protein Properties Length: 308aa    MW: 34943.6 Da    PI: 9.3411
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna26847.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP236.71e-1159105355
                      AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                              +kGV   + +grW A+I+       + r++lg+f+++ +Aa a++ a+ kl++
  mrna26847.1-v1.0-hybrid  59 FKGVVLQP-NGRWGAQIYAK-----HNRVWLGTFDSKVKAAMAYDSAAIKLRN 105
                              89***99*.8*********3.....5*************************97 PP
2B3832.8e-26176259186
                              EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                       B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                              f+k+ltpsdv++++rlv+pk++a+++   +  + +l+++de++ +W++k++y+k+s+++v+tkGW++Fvka +Lk++D++ F+  +
  mrna26847.1-v1.0-hybrid 176 FQKELTPSDVGTLNRLVIPKNYATKYFPAP--DAQLSFYDENNMTWNFKYCYWKSSQSFVFTKGWNRFVKAFKLKANDTIRFYECH 259
                              99************************5333..346***********************************************9333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.38E-2057114No hitNo description
PROSITE profilePS5103216.59558114IPR001471AP2/ERF domain
SMARTSM003804.2E-1958120IPR001471AP2/ERF domain
PfamPF008471.5E-758105IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.7E-1658114IPR001471AP2/ERF domain
SuperFamilySSF541713.99E-1359113IPR016177DNA-binding domain
Gene3DG3DSA:2.40.330.104.5E-32168263IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.76E-27174258IPR015300DNA-binding pseudobarrel domain
CDDcd100176.71E-26175256No hitNo description
PROSITE profilePS5086313.225176279IPR003340B3 DNA binding domain
PfamPF023622.8E-24176259IPR003340B3 DNA binding domain
SMARTSM010191.6E-20176277IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MALEIEEDLS STGSNACTTT RLKRRYQAEE SVSSITGLLV QENKRLSHGG SNLSANTNFK  60
GVVLQPNGRW GAQIYAKHNR VWLGTFDSKV KAAMAYDSAA IKLRNGENCQ RNFAGTKLTV  120
QEQHFQNLYS EEAVLNMIKD GSYQARFVEF LMAHQVMQKV GMAESKNSVR LDRQLFQKEL  180
TPSDVGTLNR LVIPKNYATK YFPAPDAQLS FYDENNMTWN FKYCYWKSSQ SFVFTKGWNR  240
FVKAFKLKAN DTIRFYECHS TSEGDKEAKP FYMIKFDRAE VVEDAKQVNG DTKTVKLFGV  300
VIGIGEE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A1e-2617525513100DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna26847.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004301436.20.0PREDICTED: AP2/ERF and B3 domain-containing transcription factor At1g50680-like
SwissprotQ9C6882e-73RAVL3_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g51120
TrEMBLA0A3S8T9530.0A0A3S8T953_FRAAN; Transcription factor RAV3
STRINGXP_004301436.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3478222
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51120.11e-75RAV family protein