PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna26789.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family MYB_related
Protein Properties Length: 672aa    MW: 73970.3 Da    PI: 10.6314
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna26789.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.42.2e-103282346
                             SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.......TTS-HHHHHHHHHH CS
          Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmg.......kgRtlkqcksrwqk 46
                             +W t+E++ll++avk++G ++W+++a +++       +  t+ +ck+++++
  mrna26789.1-v1.0-hybrid 32 SWGTWEELLLACAVKRHGVDDWESVAMEVQgktslpqLLTTAFNCKLKYHD 82
                             6*****************************877777766777888888776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007171.7E-52986IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.2E-43086IPR009057Homeodomain-like
SuperFamilySSF466895.38E-53187IPR009057Homeodomain-like
CDDcd001674.84E-63283No hitNo description
PfamPF002493.9E-93283IPR001005SANT/Myb domain
SuperFamilySSF473703.01E-13263381IPR001487Bromodomain
Gene3DG3DSA:1.20.920.108.8E-13268381IPR001487Bromodomain
SMARTSM002971.5E-10270384IPR001487Bromodomain
PfamPF004391.5E-8284368IPR001487Bromodomain
CDDcd043691.04E-10287379No hitNo description
PROSITE profilePS500149.987289365IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009005anatomyroot
PO:0007134developmental stagesporophyte vegetative stage
Sequence ? help Back to Top
Protein Sequence    Length: 672 aa     Download sequence    Send to blast
MEQYQQHGGG GGDVSAASMK EGGEAAAEKV ESWGTWEELL LACAVKRHGV DDWESVAMEV  60
QGKTSLPQLL TTAFNCKLKY HDLQRRFHQH QAAANDDDDP DPIPWLHHLK NLRLAQLRQD  120
LHRYDVSIMS LQSKVKRLEE EGKHEDDPKP DLEEHNSKRR SRSEDKQIDK KTPDGPDRSK  180
HENQSVNGSN STCSKTHEDH PSNNNKKSSS PAEPDPLPAG SAQPSKGHSA SDSDKGSCET  240
VAKKRRRQER ESGSSEAQSS ASLTRKRRRE LEQVKEKSQP LAAVLRMIRA HQHGSLFERR  300
LTSQESDKYK SMVQQHVELE TIEAKLQNQK DSFSSNSTST LQFYRDLLLL FTNAVVFFPK  360
SSTESVAAHQ LRRLVLNEMN KSNLITRPDP SSGPSDSLPS LQARFPKHEL ERSDSLLAKH  420
KSTAPIFVCR KRSSVSSKPS TSARKASTTA DLPTAEAPAA SDIKPLNNSK KASNSNNAEE  480
DNGLAAANTT KEKPVTGTRS SRRMTTTHQV NNARASSTKK KVSSPAETPR AGKKRKTPEE  540
PATPSDKKRS GAAAAADFLK RLKRNSPAQQ KLKLKSGTGT STSSRGAEQK KRGGNKADKV  600
KERVSKQSGG ENKKQVKEES SPSKRSVGRP SKKAAETSAA ANIVSPKRSR ENGAKQQQQE  660
ASKRPKKGSR R*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1264268RKRRR
2518535KKKVSSPAETPRAGKKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna26789.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004306497.20.0PREDICTED: microtubule-associated protein futsch
TrEMBLA0A2P6S6Y00.0A0A2P6S6Y0_ROSCH; Putative transcription factor MYB-related family
STRINGXP_004306497.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18702972
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44430.12e-88DNA-binding bromodomain-containing protein