PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna26708.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | G2-like | ||||||||
Protein Properties | Length: 218aa MW: 24809.7 Da PI: 10.7823 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 31.3 | 4.7e-10 | 11 | 60 | 4 | 50 |
G2-like 4 lrWtpeLHerFveaveqLGGsek.AtPkti.lelm.kvkgLtlehvkSHL 50 +Wt e H+ Fv++v +LGG +k tP+++ +e+m +vkgL+ + H+ mrna26708.1-v1.0-hybrid 11 TEWTLEHHKTFVDVVIRLGGFNKiGTPRSVvVEMMnNVKGLSQRTLVHHM 60 58******************98857**99725777569****99998887 PP | |||||||
2 | G2-like | 43 | 1e-13 | 107 | 155 | 5 | 50 |
G2-like 5 rWtpeLHerFveaveqLGGsekAtPktilelmkv...kgLtlehvkSHL 50 Wt e H+r veav++LGG kAtP ++l+lm+ +gLt+ ++ HL mrna26708.1-v1.0-hybrid 107 SWTVEHHKRVVEAVTKLGGLSKATPTAVLRLMDEerrQGLTVRILRRHL 155 6*******************************9633369***9999999 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.0E-6 | 7 | 59 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.5E-10 | 107 | 156 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.6E-7 | 107 | 154 | IPR006447 | Myb domain, plants |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 218 aa Download sequence Send to blast |
MDVNGDRQES TEWTLEHHKT FVDVVIRLGG FNKIGTPRSV VVEMMNNVKG LSQRTLVHHM 60 VLFQLLNKRT HLSLGRRSQL ACSDPYQSLV NDFEGLQVAT PKRLLSSWTV EHHKRVVEAV 120 TKLGGLSKAT PTAVLRLMDE ERRQGLTVRI LRRHLLGLRY LQKKTQKTIH ESSQGKAWIN 180 RKKNFEEAVG DTLILINFSS CKIANGYSPA NDYRIIR* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna26708.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF17603 | 6 | 7 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G45580.1 | 8e-10 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | mrna26708.1-v1.0-hybrid |