PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

mrna26707.1-v1.0-hybrid

Organism

Fragaria vesca

Taxonomic ID

57918

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

G2-like

Protein Properties

Length: 281aa MW: 32123 Da PI: 9.9309

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
mrna26707.1-v1.0-hybrid	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	23.8	1e-07	105	145	5	44
G2-like 5 rWtpeLHerFveaveqLGGsekAtPktilelmkvk.gLtle 44 Wt e ++ ve + qLGG +AtP ++l lm+ gLt e mrna26707.1-v1.0-hybrid 105 SWTVEHYKEVVEKIIQLGGLGVATPDKVLALMDRRlGLTEE 145 6*******************************975488864 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	0.001	15	69	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	8.3E-4	105	156	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 281 aa Download sequence Send to blast
MSGYYSQTGS LPFSIRWTLE HHKQFLESVV RNGGLNKPQI KQIVSQDIMS RVYGLRSSTI 60 QLHMDYFRQF HQQNESLFKK LPEFDSLVRD FAGLGVEGAN NCWSSWTVEH YKEVVEKIIQ 120 LGGLGVATPD KVLALMDRRL GLTEEILGHI LSRLKMLQER TRIETRLEIL NERLTRIQAY 180 GHGGPMRPVI LQRLGRNVVH PYSREKIIGD ESTTLATIIK SKIDETIMSL RQLVAAHRRE 240 RGDIVEYLVT RAEPREEKME NLVTKMDHIN LGRSGSASSK *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	mrna26707.1-v1.0-hybrid

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011469841.1	0.0	PREDICTED: uncharacterized protein LOC105353050

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF17603	6	7

Link Out ? help Back to Top
Phytozome	mrna26707.1-v1.0-hybrid