PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna26696.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family bHLH
Protein Properties Length: 475aa    MW: 54090.8 Da    PI: 10.0841
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna26696.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.90.000432472861155
                              HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                              rR +++ +++  L++l+ +      +K + a++L++A  YI  Lq
  mrna26696.1-v1.0-hybrid 247 RRSQKLSDKITALQKLVSPY-----GKTDTASVLQEASVYIVLLQ 286
                              7999**************99.....9***************8777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF039391.1E-191362IPR005633Ribosomal protein L23/L25, N-terminal
Gene3DG3DSA:3.30.70.3301.1E-1968138IPR012677Nucleotide-binding alpha-beta plait domain
SuperFamilySSF541896.47E-1769132IPR012678Ribosomal protein L23/L15e core domain
PfamPF002762.0E-672112IPR013025Ribosomal protein L25/L23
PROSITE profilePS508889.642236285IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.62E-8247297IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.8E-6251291IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF557536.25E-44333473No hitNo description
Gene3DG3DSA:3.40.20.107.4E-46339472IPR029006ADF-H/Gelsolin-like domain
PROSITE profilePS5126337.98340474IPR002108Actin-depolymerising factor homology domain
CDDcd112861.31E-61341473No hitNo description
SMARTSM001026.5E-59347474IPR002108Actin-depolymerising factor homology domain
PfamPF002411.3E-34349471IPR002108Actin-depolymerising factor homology domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006412Biological Processtranslation
GO:0030042Biological Processactin filament depolymerization
GO:0005840Cellular Componentribosome
GO:0000166Molecular Functionnucleotide binding
GO:0003735Molecular Functionstructural constituent of ribosome
GO:0003779Molecular Functionactin binding
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009001anatomyfruit
PO:0007010developmental stagewhole plant fruit ripening stage
PO:0007027developmental stagewhole plant fruit formation stage 70% to final size
Sequence ? help Back to Top
Protein Sequence    Length: 475 aa     Download sequence    Send to blast
MAPKVDSKKA DPKAQALKAA KAVKSGQTFK KKAKKIRTSV TFHRPKTLKK ERNPKYPRIS  60
APPRNKLDHY QILKYPWTTE SAMKKMEDNN TLAFIVDIRA DKKKIKDAVK KMPDGTKKAY  120
VRLTPDYDAL DVANKIAVTA GYSTGEFRYD HGIFQQPLLF DKSIDSATHF EEDLQVIQNG  180
RKRQIIEVND IFPKNDLGGS IGERTTSNEW NKNKRSKVTN SQQQWHNQFQ EISMETQDNR  240
KLQVPVRRSQ KLSDKITALQ KLVSPYGKTD TASVLQEASV YIVLLQQQIQ QNLHRIFSSS  300
YINAVGLHSQ ESGSSSQVLD LRSKGLCLVP ISMTQKANAA SGMAVHDDCK LKFLDLKAKR  360
TYRFIVYKIE EKQKQVVVEK VGEPSESYED FSACLPADEC RYAVYDFDYV TEENCQKSRI  420
IFIAWSPDIS RVRSKMIYAS SKDRFKRELD GIQVELQATD PTEMGLDVIR SRAN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1f7s_A2e-853374742139ACTIN DEPOLYMERIZING FACTOR (ADF)
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna26696.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004307556.20.0PREDICTED: uncharacterized protein LOC101301142
TrEMBLA0A0U4JRK11e-134A0A0U4JRK1_ZIZJJ; Actin-depolymerizing factor 1
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF133551522
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21340.13e-15bHLH family protein