PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna26628.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family Dof
Protein Properties Length: 370aa    MW: 39540.2 Da    PI: 9.2555
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna26628.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof1208.5e-3875135262
                   zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                              +e+alkcprC+stntkfCy+nnysl+qPr+fCk+CrryWt+GGalr vPvGgg+r+nk+s+
  mrna26628.1-v1.0-hybrid  75 PETALKCPRCESTNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGALRSVPVGGGCRRNKRSK 135
                              67899*****************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074781.0E-3259128IPR003851Zinc finger, Dof-type
PfamPF027015.6E-3278133IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.22779133IPR003851Zinc finger, Dof-type
PROSITE patternPS01361081117IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009640Biological Processphotomorphogenesis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MVFSSIPGYL DPPNNWQQQQ STHHHQQQGG GTDQNHSHLL PPPPPSSRDG GNGGAGTIRP  60
GSMSDRARQA KLPQPETALK CPRCESTNTK FCYFNNYSLT QPRHFCKTCR RYWTRGGALR  120
SVPVGGGCRR NKRSKRSKSP ASASAADHHQ RQGGAGSSSS TVSNSNSCST SENLLGHLAP  180
PPPHQFPFLP SLHHLSDYNS GGLSFGGIQQ QPSGVEFHSQ NIGASGSSSG GIGSILSTGL  240
AEHWRSSLQH HQVQQGQQFP FVANLEPPSS HGLYQFEGNQ NNNAQDTGTY GRGGAQLLSK  300
ALVDSSIGAT QMANVKMEES QALNMSRNFL GSLGNDHHQQ YWSSTTSAGG INNAWTDLSG  360
FTSSTSHLL*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00407DAPTransfer from AT3G55370Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna26628.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011469789.10.0PREDICTED: dof zinc finger protein DOF2.4 isoform X1
TrEMBLA0A2P6SK990.0A0A2P6SK99_ROSCH; Putative transcription factor C2C2-Dof family
STRINGXP_004308873.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65634143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02460.11e-41Dof family protein