PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna26538.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family GATA
Protein Properties Length: 356aa    MW: 38624.8 Da    PI: 4.5931
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna26538.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA49.74.9e-16208244135
                     GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                              C++Cg+++  Tp +Rrgp g++tLCnaCGl+++ kg+
  mrna26538.1-v1.0-hybrid 208 CQHCGVSEnnTPAMRRGPAGPRTLCNACGLMWANKGT 244
                              *******99*************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009793.2E-568103IPR010399Tify domain
PROSITE profilePS5132012.01868103IPR010399Tify domain
PfamPF062005.1E-972102IPR010399Tify domain
PfamPF062039.9E-15136177IPR010402CCT domain
PROSITE profilePS5101712.65136178IPR010402CCT domain
PROSITE profilePS501148.524202250IPR000679Zinc finger, GATA-type
SMARTSM004011.4E-9202255IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.71E-11203253No hitNo description
Gene3DG3DSA:3.30.50.101.3E-14206249IPR013088Zinc finger, NHR/GATA-type
CDDcd002025.25E-16207254No hitNo description
PfamPF003206.9E-14208244IPR000679Zinc finger, GATA-type
PROSITE patternPS003440208235IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MAAVNPQPLQ ARPYEDHVAA AGSFQVEDDE GEYEDGGGDE IMEEEEAEAH ASSVARGGVS  60
VLTSEAAVAT RTSELTLSFE GEVYVFPAVT PQKVRAVLLL LGGRDMPTGV PTVEVSYDQN  120
IRGVGDTPKR SNLSRRIASL VRFREKRKER CFDKKIRYTV RKEVAQRMHR KNGQFASLKE  180
NSGGSGWDLA QSTLQDGTPR PETVLRRCQH CGVSENNTPA MRRGPAGPRT LCNACGLMWA  240
NKGTLRDLSK GGRSLSIDHI EPATPLEMKP SIVECQFSAN QDGHGAPEDP SKSVIEGSND  300
ASVNLDVDNF HESPEDLTNT LPMGIVSSSN DDEQEPLLEL PSTSDTDLDI PTNFD*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1125130DTPKRS
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00369DAPTransfer from AT3G21175Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna26538.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004287412.10.0PREDICTED: GATA transcription factor 24-like
SwissprotQ8GXL71e-69GAT24_ARATH; GATA transcription factor 24
TrEMBLA0A2P6PGL40.0A0A2P6PGL4_ROSCH; Putative transcription factor TIFY family
STRINGXP_004287412.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33193364
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.28e-72ZIM-like 1
Publications ? help Back to Top
  1. Haas BJ, et al.
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome Biol., 2002. 3(6): p. RESEARCH0029
    [PMID:12093376]