PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna26537.1-v1.0-hybrid
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family GATA
Protein Properties Length: 296aa    MW: 31711.8 Da    PI: 5.5825
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna26537.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA52.75.6e-17204240135
                     GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                              C++Cgt++  Tp++Rrgp+g+++LCnaCGl+++ +g+
  mrna26537.1-v1.0-hybrid 204 CTHCGTSSkcTPMMRRGPSGPRSLCNACGLFWANRGV 240
                              *********************************9997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132015.42869104IPR010399Tify domain
SMARTSM009794.0E-1369104IPR010399Tify domain
PfamPF062001.7E-1372103IPR010399Tify domain
PROSITE profilePS5101712.739136178IPR010402CCT domain
PfamPF062031.3E-15136178IPR010402CCT domain
SuperFamilySSF577163.61E-12197249No hitNo description
SMARTSM004012.7E-15198251IPR000679Zinc finger, GATA-type
PROSITE profilePS5011410.936198256IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.1E-15202245IPR013088Zinc finger, NHR/GATA-type
CDDcd002026.26E-17203250No hitNo description
PfamPF003201.3E-14204240IPR000679Zinc finger, GATA-type
PROSITE patternPS003440204231IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MYGHAHPMQN QIPAGGANDD DAPGAESIDN AHIHYEGHTL EDGGVVVEEA TSDDVYIQGG  60
NTDLDMAIPY EGSSQLTLSF RGQVYVFDSV TPEKVQAVLL LLGGSESSSG NQGGDMAMQN  120
QRAITEFPAG CTQPHRAASL NRFRQKRKER NFDKKVRYSV RQEVALRMQR NKGQFTSSKK  180
SDGDYSWGSG PESRQDDNNA ETSCTHCGTS SKCTPMMRRG PSGPRSLCNA CGLFWANRGV  240
LRDISKRPQG HSLAAGEQGE AEADDSDTGM AMVVHGGANV VPLSNGDNKA LVAET*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00451DAPTransfer from AT4G24470Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna26537.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004287423.10.0PREDICTED: GATA transcription factor 25
SwissprotQ9LRH67e-84GAT25_ARATH; GATA transcription factor 25
TrEMBLA0A2P6PGL50.0A0A2P6PGL5_ROSCH; Putative transcription factor TIFY family
STRINGXP_004287423.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28363368
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24470.32e-76GATA-type zinc finger protein with TIFY domain
Publications ? help Back to Top
  1. Brand LH, et al.
    Screening for protein-DNA interactions by automatable DNA-protein interaction ELISA.
    PLoS ONE, 2013. 8(10): p. e75177
    [PMID:24146751]